Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g0546 ATGGCCTCCGATCGTTTGACCCGTGTTCACAGCCTCCGTGAGAGGCTTGATGAAACCCTCACTGCTAACAGGAACGAAATTTTGGCCCTTCTGTCAAGGATCGAAGCCAAGGGCAAGGGGATCCTGCAACACCATCAGGTCATTGCTGAGTTTGAGGAAATTCCTGAGGGGAACAGGCAGAAGCTTACTGATGGTGCCTTTGGAGAAGTTTTGAGATCTACACAGGAAGCCATAGTTTTGCCCCCATGGGTTGCTCTGGCTGTTCGCCCAAGGCCTGGTGTGTGGGAGTACCTGAGAGTGAATGTGCACGCTCTTGTTGTTGAGGAGTTGCAAGCTGCTGAGTACCTGCGCTTCAAGGAGGAACTTGTTGATGGAAGCTCTAATGGCAACTTTGTGCTTGAGTTGGACTTTGAACCATTCACTGCATCCTTCCCCCGCCCAACTCTTAACAAGTCAATTGGAAATGGTGTGCAATTCCTCAACCGCCACCTTTCTGCCAAACTCTTCCACGACAAGGAGAGCTTGCACCCACTTTTGGAATTCCTCAGGCTTCACAGCTACAAGGGAAAGACTTTGATGTTGAATGACAGAATTCAAACCCCGGATTCTCTCCAACATGTTCTGAGGAAAGCTGAGGAGTATCTGGGCACAGTTCCTCCTGAAACTCCCTACTCAGCATTTGAGCACAAGTTCCAGGAGATTGGTTTGGAGAGAGGGTGGGGTGACACCGCAGAGCGTGTCCTTGAGTCAATTCAACTTCTCTTGGATCTTCTCGAGGCCCCTGACCCGTGCACGCTTGAGACTTTCCTTGGAAGAATCCCTATGGTCTTTAATGTTGTTATTCTTTCTCCCCATGGTTACTTTGCCCAAGATAATGTGTTGGGATACCCTGACACTGGTGGTCAGGTTGTTTACATCTTGGATCAAGTTCGTGCTTTGGAGAATGAGATGCTCCATCGCATTAAGCAACAAGGATTGGACGTTGTTCCTCGCATTCTCATTATCACCCGTCTTCTCCCTGATGCAGTAGGAACTACTTGTGGCCAACGTCTTGAGAAGGTGTTTGGAACTGAGCACTCCCATATTCTTCGAGTTCCCTTCAGAAATGAGAAGGGAATGGTTCGCCAGTGGATCTCCAGATTCGAAGTCTGGCCCTACTTGGAAACTTACACCGAGGATGTTGCTCATGAGCTTGCCAAGGAGTTGCAAGGCAAGCCAGATCTGATCGTTGGAAACTACAGTGATGGAAACATTGTTGCCTCTTTGTTGGCACATAAATTAGGTGTCACTCAGTGTACCATTGCTCACGCACTCGAGAAGACCAAATACCCCGAATCCGACATTTACTGGAAAAAATTCGAAGAGAAATATCACTTCTCTTGCCAATTCACAGCTGATCTCTTTGCCATGAACCACACAGACTTCATTATCACCAGTACCTTCCAAGAGATTGCTGGAAGCAAGGACACCGTTGGACAGTATGAGAGTCACACAGCCTTCACCCTTCCTGGACTCTACCGTGTTGTTCATGGTATTGATGTCTTTGATCCAAAATTCAACATTGTCTCCCCCGGAGCTGATCAAACCATTTACTTCCCATACACCGATACTAGCCGTAGGTTGACATCCTTCCACCCCGAAATCGAAGAGCTTCTTTACAGCTCAGTGGAGAATGAAGAACACATATGTGTGTTGAAGGACCGCAGCAAGCCAATTATCTTCACCATGGCAAGGTTGGACCGTGTGAAGAACATCACAGGACTTGTTGAGTGGTATGGTAAGAACGCCAAGCTGAGGGAGTTGGTGAACCTTGTTGTGGTTGCTGGAGACAGGAGGAAGGAGTCTAAGGACTTGGAAGAGAAGGCTGAGATGAAGAAGATGTATGGCCTCATTGAGACCTACAAGTTGAACGGCCAATTCAGATGGATTTCCTCTCAGATGAACCGTGTGAGGAATGGTGAGCTGTACCGTGTGATTTGTGACACCAAGGGAGCTTTTGTGCAGCCTGCTGTGTATGAAGCTTTTGGTTTGACAGTTGTTGAGGCCATGACTTGTGGGTTGCCAACATTTGCCACATGCAATGGTGGTCCTGCTGAGATCATTGTTCATGGCAAGTCTGGATTCCACATTGACCCTTACCATGGTGACCGTGCTGCTGAGCTCCTTGTTGACTTCTTTGAGAAGTGCAAGGTTGACCCAACTCACTGGGACAAGATCTCACTGGGTGGTCTCCAGCGTATTGAAGAGAAGTACACATGGCAAATTTACTCTCAGAGGCTTCTGACTCTCACTGGGGTCTATGGCTTCTGGAAGCACGTGTCTAACCTTGACCGCCGTGAGAGCCGCCGCTATCTTGAGATGTTCTATGCTCTCAAGTACCGCAAATTGGCCGAGTCTGTGCCCCTTGCTGTTGAGTAA 2418 0.4839 MASDRLTRVHSLRERLDETLTANRNEILALLSRIEAKGKGILQHHQVIAEFEEIPEGNRQKLTDGAFGEVLRSTQEAIVLPPWVALAVRPRPGVWEYLRVNVHALVVEELQAAEYLRFKEELVDGSSNGNFVLELDFEPFTASFPRPTLNKSIGNGVQFLNRHLSAKLFHDKESLHPLLEFLRLHSYKGKTLMLNDRIQTPDSLQHVLRKAEEYLGTVPPETPYSAFEHKFQEIGLERGWGDTAERVLESIQLLLDLLEAPDPCTLETFLGRIPMVFNVVILSPHGYFAQDNVLGYPDTGGQVVYILDQVRALENEMLHRIKQQGLDVVPRILIITRLLPDAVGTTCGQRLEKVFGTEHSHILRVPFRNEKGMVRQWISRFEVWPYLETYTEDVAHELAKELQGKPDLIVGNYSDGNIVASLLAHKLGVTQCTIAHALEKTKYPESDIYWKKFEEKYHFSCQFTADLFAMNHTDFIITSTFQEIAGSKDTVGQYESHTAFTLPGLYRVVHGIDVFDPKFNIVSPGADQTIYFPYTDTSRRLTSFHPEIEELLYSSVENEEHICVLKDRSKPIIFTMARLDRVKNITGLVEWYGKNAKLRELVNLVVVAGDRRKESKDLEEKAEMKKMYGLIETYKLNGQFRWISSQMNRVRNGELYRVICDTKGAFVQPAVYEAFGLTVVEAMTCGLPTFATCNGGPAEIIVHGKSGFHIDPYHGDRAAELLVDFFEKCKVDPTHWDKISLGGLQRIEEKYTWQIYSQRLLTLTGVYGFWKHVSNLDRRESRRYLEMFYALKYRKLAESVPLAVE 805
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g0546 805 Gene3D Glycogen Phosphorylase B; 280 796 - -
Ssu6g0546 805 SUPERFAMILY UDP-Glycosyltransferase/glycogen phosphorylase 295 763 - -
Ssu6g0546 805 PANTHER SUCROSE SYNTHASE 1 805 - -
Ssu6g0546 805 PANTHER - 1 805 IPR012820 GO:0005985|GO:0016157
Ssu6g0546 805 Pfam Sucrose synthase 8 553 IPR000368 GO:0005985|GO:0016157
Ssu6g0546 805 Gene3D - 146 275 - -
Ssu6g0546 805 TIGRFAM sucr_synth: sucrose synthase 24 802 IPR012820 GO:0005985|GO:0016157
Ssu6g0546 805 Gene3D - 25 145 - -
Ssu6g0546 805 Gene3D Glycogen Phosphorylase B; 527 753 - -
Ssu6g0546 805 Pfam Glycosyl transferases group 1 564 736 IPR001296 GO:0016757
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g0546 Ssu-Chr6 8456437 8460291 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g0546 6 805 Glycosyltransferase AT3G43190 85.125 0.0 1436
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g0546 K00695 - gmx:547508 1580.46
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu6g0546 6 8456437 8460291 Ssu6g0546 6 8456437 8460291 ECH
Ssu6g0546 6 8456437 8460291 Ssu1g1640 1 39457474 39462027 PCT