LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Ssu6g0450	ATGACGGTGGTCGGGCTCTTCCTCACGGCCACGAAGCTCGCCGGAGCTCTGGTCACTCTCACCGTCGCCGCCAACGCCTTCTCCTACTTCCGTTTTCGCAAGAAGAACCTTCGCTCTTTCCGTTCCCCTATCGACGAATCCTCCGACACTCTCGCACTCTTTAACGTCACCGACGAAGGGGAGGATGGGTTTTTCTTTGGTTTGGCGACAGCGCCAGCACATGCTGAGGACAGGCTTGATGATGCTTGGATCCAGTTTGCTGAGAACAAGAATGGTGAAGGTGGTGGTGACTCAGAGGGGAAGCAGAGGGCGGATGCTGTGATGGGTTCTGCTTCTGGCGATGGTGGGTCCCAGCGGGCCGCCACATCTCCGCGAGTCAGGAAGCCCCTTAAGGTGGCGATGGAGGCCATGATTAGGGGATTTGAGAAGTACATGGAAGTAGAAGggcaagaaggagaagaagaaccCCGTCCTAATGTAACCGCTTGGCATAATGTTCCACGCCCGGAGGAGAGGTTAAGGTTTTGGTCTGATCCTGAAACAGAAATAAAATTGGCCAAGGATACTGGTGTGACTGTTTTTCGCATGGGAATAGATTGGTCAAGGATCATGCCAGTGGAGCCAGTAAACAGCCTTAATGAATCTGTTAACTATGCTGCGTTGGAACGGTATAAGTGGATTATCAATAGGGTTCGATCAGATGGAATGAAGGTGATGCTCACTCTTTTTCATCACTCCCTTCCACCCTGGGCTGGTGAGTATGGAGGTTGGAAGCTGGAAAAGACAGTGGATTATTTCATGGACTTTACCAGGCTTGTTGTAAACAGTGTCTCAGATTTGGTAGACTATTGGGTAACATTTAATGAGCCCCATGTCTTCTGTATGCTTACTTATTGTGCTGGAGCTTGGCCTGGTGGTCATCCTGATATGCTTGAGGCTGCTACTTCTGCACTTCCAACTGGTGTTTTCCAACAGGCCATGCATTGGATGTCTATTGCACACTCAAAGGCATATGACTACATCCATGAACTAAGTAACTCATTAAATCCAATAGTCGGTGTAGCACATCATGTGTCATTTATGCGACCCTATGGTCTGTTTGATATTGCTGCTGTTTCACTGGCTAATTCATTGACTCTCTTCCCATACATTGATGGAATATCTGACAAGCTGGACTTTATAGGCATAAACTACTATGGGCAGGAAGTGGTTTCGGGTGCAGGCCTGAAGCTGGTAGAAAATGATGAGTACAGTGAATCTGGTCGTGGGGTATACCCTGATGGCTTATACCGCATGCTGCTTCAATTCCATGAAAGATACAAACATCTAAATATTCCCTTCATCATTACTGAAAATGGGGTTTCGGATGAGACAGATTTGATCCGCCGGCCATATCTCTTGGAACATTTGCTTGCTGTTTATGCTGCCATGATCATGGGTGTGCCTGTGCTTGGTTACCTGTTCTGGACTATTTCTGATAACTGGGAGTGGGCCGATGGATATGGTCCGAAGTTTGGACTTGTTGCAGTTGACCGGGCAAATAATCTTGCAAGGATCCCTCGCCCCTCTTACCATCTATTTTCTAAAATTGTGAATACCGGCAAAGTTACACGTGAAGATCGAGAAGGAGCATGGAATGAACTCCAAAGAGCTGcgaaagagaagaaaacaagaCCATTTTATCGGGCTGTGGATAAACACCGTTTAATGTATGCAGGTGGACTTGATGAACCTGTACAGCGACCTTATATTGAACGAGATTGGCGCTTTGGTTATTATCAGATGGATGGACTCCAGGATTACTTGAGCCGCTTCTCAAGGTTCATTATTCGACCATTCTCCCTGTTCTccctaaaaaggaaaagaaaattgcaAAAGAAGAATGCCAAATTAATTCTTCAGCCTCTTGAAGCTTAG	1917	0.4549	MTVVGLFLTATKLAGALVTLTVAANAFSYFRFRKKNLRSFRSPIDESSDTLALFNVTDEGEDGFFFGLATAPAHAEDRLDDAWIQFAENKNGEGGGDSEGKQRADAVMGSASGDGGSQRAATSPRVRKPLKVAMEAMIRGFEKYMEVEGQEGEEEPRPNVTAWHNVPRPEERLRFWSDPETEIKLAKDTGVTVFRMGIDWSRIMPVEPVNSLNESVNYAALERYKWIINRVRSDGMKVMLTLFHHSLPPWAGEYGGWKLEKTVDYFMDFTRLVVNSVSDLVDYWVTFNEPHVFCMLTYCAGAWPGGHPDMLEAATSALPTGVFQQAMHWMSIAHSKAYDYIHELSNSLNPIVGVAHHVSFMRPYGLFDIAAVSLANSLTLFPYIDGISDKLDFIGINYYGQEVVSGAGLKLVENDEYSESGRGVYPDGLYRMLLQFHERYKHLNIPFIITENGVSDETDLIRRPYLLEHLLAVYAAMIMGVPVLGYLFWTISDNWEWADGYGPKFGLVAVDRANNLARIPRPSYHLFSKIVNTGKVTREDREGAWNELQRAAKEKKTRPFYRAVDKHRLMYAGGLDEPVQRPYIERDWRFGYYQMDGLQDYLSRFSRFIIRPFSLFSLKRKRKLQKKNAKLILQPLEA	638

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Ssu6g0450	638	Gene3D	Glycosidases	141	545	-	-
	Ssu6g0450	638	Pfam	Glycosyl hydrolase family 1	386	533	IPR001360	GO:0004553\|GO:0005975
	Ssu6g0450	638	Pfam	Glycosyl hydrolase family 1	180	365	IPR001360	GO:0004553\|GO:0005975
	Ssu6g0450	638	PANTHER	GLYCOSYL HYDROLASE	3	592	IPR001360	GO:0004553\|GO:0005975
	Ssu6g0450	638	MobiDBLite	consensus disorder prediction	88	126	-	-
	Ssu6g0450	638	SUPERFAMILY	(Trans)glycosidases	160	538	IPR017853	-
	Ssu6g0450	638	PRINTS	Glycosyl hydrolase family 1 signature	480	497	IPR001360	GO:0004553\|GO:0005975
	Ssu6g0450	638	PRINTS	Glycosyl hydrolase family 1 signature	447	455	IPR001360	GO:0004553\|GO:0005975
	Ssu6g0450	638	PRINTS	Glycosyl hydrolase family 1 signature	504	516	IPR001360	GO:0004553\|GO:0005975
	Ssu6g0450	638	PRINTS	Glycosyl hydrolase family 1 signature	459	470	IPR001360	GO:0004553\|GO:0005975
	Ssu6g0450	638	PRINTS	Glycosyl hydrolase family 1 signature	390	404	IPR001360	GO:0004553\|GO:0005975
	Ssu6g0450	638	ProSitePatterns	Glycosyl hydrolases family 1 active site.	447	455	IPR018120	-
	Ssu6g0450	638	PANTHER	GALACTOLIPID GALACTOSYLTRANSFERASE SFR2, CHLOROPLASTIC	3	592	-	-

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Ssu6g0450	6	635	Glycoside Hydrolase	AT3G06510	62.239	0.0	843

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Ssu6g0450	K21362		-	gmx:100792401	1155.58

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Ssu6g0450	6	7006693	7012801	Ssu6g0450	6	7006693	7012801	ECH