Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g0449 atgaatatgaatgtTATTCTGTGTCTCCAGTTcctatgtttctttcttttaagtACTTGGTTCATTAAAGCATTTGCAATAAATGTAACCTATGAATCTGATAGAATAATCGACCTTCCTGGCCAACCTTCAAGCCCCTCAGTCTCACACTTTTCAGGTTACATCACTGTCAGTGAAAACCATGGGAGGGCCCTTTTCTACTGGTTCTTTGAAGCTCAATCTGAACCTTCCAAGAAGCCTCTCCTTCTCTGGCTCAATGGAGGACCTGGATGCTCCTCTATTGGGTATGGTGCAGTTGTTGAGATTGGACCTCTTACAGTCAACAAAAATGGGGAAGGACTACATTTCAACCCATACGCCTGGAATCAAGAagcaaatttattatttgtggAGTCCCCTGTTGGAGTTGGATTTTCTTATACCAACACATCTTCTGATCTTACCATATTAGAGGATAATTTTGTGGCTGAGGATGCCTACAATTTCTTGGTGAATTGGCTACAAAGATTCCCACAGTTCAAATCCCGGGACTTTTTTATATCAGGAGAAAGCTATGCTGGTCACTATATCCCTCAGCTTGCAGAGTTAATCTTTGATCGAAACAAAGATAGGAACAAATACCCCTCTATTAATCTTAAAGGTTTTATTGCAGGGAACCCAGAAACTGATGATTACTATGACTATAAAGGCCTGCTGGAATATGCATGGAGCCACGCAGTTATATCAGACCAGCAATACGACAAAGCAAAACAAGTATGtgattttaaacaattcaattGGTCTAATGAATGCAATCAGGCCATGAACGAAGTATTCCAAGATTACAAAGAAATTGACATATACAACATTTATGCCCCGGCATGTCGTCTAAACAGCACATCCTCAACAGCTGATGATAGCAACAGTAACGGCCCTGAATCAGTTATAAAGGTGAGAAATGATTACAGACTAAGGAGGATGAGAATTTTTGGGGGCTACGACCCTTGTTATTCCAATTACGCAGAGGAATATTTCAATAGAAAAGATGTTCAGTCATCTTTTCATGCAGATGCTAAAAGAGCCCCTAATGTAACATGGAATGTTTGCAATAACTCCATATTGCTGGCTTACAACTTCTCTGTTTTTTCGGTCCTACCTATCTACACCAAACTCATCAAGGGTGGGCTTAAGATATGGATTTACAGTGGGGACGCAGATGGCAGAGTACCAGTGATAGGGACACGATATTGCGTTGAGGCTCTCGGATTACCTCTCAAGTCTACTTGGCGGACTTGGTACCATGATAATCAGGTTGGAGGAAGAATAGTTGAATATGAAGGGTTGACATATGTGACAGTGAGAGGAGCTGGTCACTTGGTGCCACTCAACAAGCCCAGTGAGGCTCTCTCCCTAATTCATTCTTTCTTAACAGGCGAGCATCTTCCTACCCGTGGATAA 1437 0.4015 MNMNVILCLQFLCFFLLSTWFIKAFAINVTYESDRIIDLPGQPSSPSVSHFSGYITVSENHGRALFYWFFEAQSEPSKKPLLLWLNGGPGCSSIGYGAVVEIGPLTVNKNGEGLHFNPYAWNQEANLLFVESPVGVGFSYTNTSSDLTILEDNFVAEDAYNFLVNWLQRFPQFKSRDFFISGESYAGHYIPQLAELIFDRNKDRNKYPSINLKGFIAGNPETDDYYDYKGLLEYAWSHAVISDQQYDKAKQVCDFKQFNWSNECNQAMNEVFQDYKEIDIYNIYAPACRLNSTSSTADDSNSNGPESVIKVRNDYRLRRMRIFGGYDPCYSNYAEEYFNRKDVQSSFHADAKRAPNVTWNVCNNSILLAYNFSVFSVLPIYTKLIKGGLKIWIYSGDADGRVPVIGTRYCVEALGLPLKSTWRTWYHDNQVGGRIVEYEGLTYVTVRGAGHLVPLNKPSEALSLIHSFLTGEHLPTRG 478
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g0449 478 SUPERFAMILY alpha/beta-Hydrolases 32 475 IPR029058 -
Ssu6g0449 478 Pfam Serine carboxypeptidase 40 470 IPR001563 GO:0004185|GO:0006508
Ssu6g0449 478 ProSitePatterns Serine carboxypeptidases, serine active site. 180 187 IPR018202 GO:0004185
Ssu6g0449 478 Gene3D - 329 366 - -
Ssu6g0449 478 Gene3D - 377 471 - -
Ssu6g0449 478 PANTHER SERINE PROTEASE FAMILY S10 SERINE CARBOXYPEPTIDASE 15 476 IPR001563 GO:0004185|GO:0006508
Ssu6g0449 478 ProSitePatterns Serine carboxypeptidases, histidine active site. 441 458 IPR033124 GO:0004185
Ssu6g0449 478 Gene3D alpha/beta hydrolase 30 290 IPR029058 -
Ssu6g0449 478 PRINTS Carboxypeptidase C serine protease (S10) family signature 166 191 IPR001563 GO:0004185|GO:0006508
Ssu6g0449 478 PRINTS Carboxypeptidase C serine protease (S10) family signature 441 454 IPR001563 GO:0004185|GO:0006508
Ssu6g0449 478 PRINTS Carboxypeptidase C serine protease (S10) family signature 117 129 IPR001563 GO:0004185|GO:0006508
Ssu6g0449 478 PRINTS Carboxypeptidase C serine protease (S10) family signature 130 140 IPR001563 GO:0004185|GO:0006508
Ssu6g0449 478 PANTHER SERINE CARBOXYPEPTIDASE-LIKE 26 15 476 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g0449 Ssu-Chr6 7000641 7003899 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g0449 359 474 Calmodulin-binding Proteins AT2G22960 31.624 5.41e-14 68.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g0449 K16297 - gmx:100792930 904.049
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu6g0449 6 7000641 7003899 Ssu6g0449 6 7000641 7003899 ECH