Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g0442 ATGACAAACTTTAAGCCCCTAATTCTCTGCTTCTGTCTCCAAGCTATTGTTGTTATGGTTTCAATACCAACAAGCCACTGCAGAACCTTCCTTCCAAACGATGAAAAGCTGATAGAGAACACTTGCAAGAAGACACCCAACTACAATGTTTGCCTTCAGTCTCTCAAGGCAAGCCCTGGGAGCTCCAGTGCTGATGTCACAGGGCTTGCTCAAATCATGGTCAAAGTCATGAAGGCAAAAGCAAACGATGCCTTGAAAAGAATCCATGAGTTGCAAAGGGTGGGAGCAGAACCTAAGCAACGGAGAGCCTTGAGTTCTTGTGCTGACAAGTACAAAGCAGTTTTAATAGCTGATGTTCCTCAAGCCACTGAGGCCCTGCAGAAAGGGGACCCCAAGTTTGCTGAAGATGGGGCAAATGATGCTGCTAATGAGGCCACCTATTGTGAGAGTGATTTCTCTGGGAAATCACCCCTCACCAAACAGAACAATGCTATGCATGATGTTGCAGCTGTTGCAGCGGCTATTGTTAGATTGTTGCTCTAG 543 0.4622 MTNFKPLILCFCLQAIVVMVSIPTSHCRTFLPNDEKLIENTCKKTPNYNVCLQSLKASPGSSSADVTGLAQIMVKVMKAKANDALKRIHELQRVGAEPKQRRALSSCADKYKAVLIADVPQATEALQKGDPKFAEDGANDAANEATYCESDFSGKSPLTKQNNAMHDVAAVAAAIVRLLL 180
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g0442 180 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 35 179 IPR035513 -
Ssu6g0442 180 Gene3D Invertase/pectin methylesterase inhibitor family protein 33 180 IPR035513 -
Ssu6g0442 180 PANTHER PECTINESTERASE INHIBITOR-LIKE 16 180 - -
Ssu6g0442 180 SMART PMEI_2 33 175 IPR006501 GO:0004857
Ssu6g0442 180 Coils Coil 74 94 - -
Ssu6g0442 180 Pfam Plant invertase/pectin methylesterase inhibitor 37 175 IPR006501 GO:0004857
Ssu6g0442 180 PANTHER PLANT INVERTASE/PECTIN METHYLESTERASE INHIBITOR 16 180 - -
Ssu6g0442 180 CDD CIF_like 35 179 IPR034087 GO:0004857|GO:0043086
Ssu6g0442 180 TIGRFAM PME_inhib: pectinesterase inhibitor domain 12 179 IPR006501 GO:0004857
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g0442 Ssu-Chr6 6857633 6858175 Dispersed/Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g0442 - - gmx:100500640 287.345
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu6g0442 6 6857633 6858175 Ssu6g0442 6 6857633 6858175 ECH