Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g0437 ATGGACGCCGATAACGGTTCGAGGAACGCGAAACTGGACGACGCACCCATGCAAATGGATTCCGGCGACTCCTCCGGCGCTCAAGCtaaagacaaagaaaaggaGGAACTCGCAGAGACTATGAACAAGCTGCATATTGAAGGATCGTCGTCTGGGAATGGATCGCCTAATTTCAGAAGAAAACCGGTCATTATCATAGTTGTTGGAATGGCAGGGAGTGGGAAAACGACACTCCTCCATAGGTTGGTTTGCCATACACATTTGAAAGACATTCGGGGTTATGTGATGAATCTCGACCCTGCCGTCATGACACTCCCATATCCTGCTAACATTGATGTAAGAGACACTGTTAAATACAAAGAAGTCATGAAGCAGTTTAACCTTGGTCCAAATGGCGGAATTTTGACTTCTTTGAACTTGTTTGCTACCAAGTTCGATGAGGTAATTTCTGTAATTGAGAGACGGGCAGATCAACTTGACTATGTTCTTGTGGATACCCCTGGTCAGATTGAAATATTTACCTGGTCTGCTTCTGGTGCTATCATTACAGAAGCTTTTGCATCCACATTTCCCACTGTAGTTGCCTATGTAGTTGATACACCTCGTTCAGAAGATCCCACCACTTTCATGAGCAACATGTTGTATGCTTGTAGTATCCTCTATAAGACAAGGTTACCTCTCATCTTGACATTCAACAAGGTTGATGTAGCAGAACATCAGTTTGCCTTGGAGtGGATGGAGGATTTTGAGGCGTTCCAAGCAGCAGCAAGTTCAGATCGCTCGTATACATCAACTTTAACTCAGAGCCTTTCTCTTGTGCTAGATGAATTCTACAACAATTTAAAATCAGTTGGAGTTTCTGCAGTTTCTGGTGCAGGAATGGAAGCCTTCTTTAAGGCCGTTGAAGCCAGCGCAGAGGAATACATGGAAAACTATAAGGCGGATCTTGATAAAAGACGTGAAGAGAAGCAACGCTTGGAGGAAGACCGCAGGAGGGAGAACATGGATAAACTAAGGAGGGACATGGAGAAATCTGGGGGAGAAACTGTAGTCTTGAGCACTGGTTTGAAGGAcaaagaaacaagtaaaagtaaaactatGATGGATGAGGAAGATGAGGTTGAAGAGGATGAGGAAatgcatgatgatgatgatgattttggGATATATACTGAAGAGGAGGATGCTATAGATGAGGACGAAGATGAGGAGGTTGATAGGTTCGGCTTCTAA 1233 0.4217 MDADNGSRNAKLDDAPMQMDSGDSSGAQAKDKEKEELAETMNKLHIEGSSSGNGSPNFRRKPVIIIVVGMAGSGKTTLLHRLVCHTHLKDIRGYVMNLDPAVMTLPYPANIDVRDTVKYKEVMKQFNLGPNGGILTSLNLFATKFDEVISVIERRADQLDYVLVDTPGQIEIFTWSASGAIITEAFASTFPTVVAYVVDTPRSEDPTTFMSNMLYACSILYKTRLPLILTFNKVDVAEHQFALEWMEDFEAFQAAASSDRSYTSTLTQSLSLVLDEFYNNLKSVGVSAVSGAGMEAFFKAVEASAEEYMENYKADLDKRREEKQRLEEDRRRENMDKLRRDMEKSGGETVVLSTGLKDKETSKSKTMMDEEDEVEEDEEMHDDDDDFGIYTEEEDAIDEDEDEEVDRFGF 410
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g0437 410 CDD GPN1 63 303 - -
Ssu6g0437 410 PANTHER GPN-LOOP GTPASE 24 406 - -
Ssu6g0437 410 MobiDBLite consensus disorder prediction 1 37 - -
Ssu6g0437 410 MobiDBLite consensus disorder prediction 321 410 - -
Ssu6g0437 410 MobiDBLite consensus disorder prediction 321 346 - -
Ssu6g0437 410 Pfam Conserved hypothetical ATP binding protein 67 305 IPR004130 -
Ssu6g0437 410 Coils Coil 309 336 - -
Ssu6g0437 410 Gene3D - 62 320 IPR027417 -
Ssu6g0437 410 Coils Coil 27 47 - -
Ssu6g0437 410 PANTHER XPA-BINDING PROTEIN 1-RELATED 24 406 IPR004130 -
Ssu6g0437 410 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 64 302 IPR027417 -
Ssu6g0437 410 MobiDBLite consensus disorder prediction 370 410 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g0437 Ssu-Chr6 6796076 6799180 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g0437 K24104 - gmx:100797318 667.537
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu6g0437 6 6796076 6799180 Ssu6g0437 6 6796076 6799180 ECH