Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g0427 ATGTGCCCTTCCGGTCGCACCCTCCGCCCTCGCGCCTCAGATTTCCGACCGGCATTCGACGTCCTCGACGCCGACCGCGACGGCAAGATAAGCCGCGACGACCTCCGCGCCTTCTATGCCGGCGTGCACGGCGGAGCCAGCGGCGGAGACGACGTGATCGGGGCAATGATGACGGTGGCGGACACCAACAAGGACGGGTTCGTGGAGTACGAGGAGTTCGAGCGCGTGGTGGCGGGGAACAACGCGGAGAGAAAGCCCGTGGGGTGTGGGGCCATGGAGGACGTGTTCAGGGTTATGGACAAGGACGGCGACGGCAAGCTCAGCCACCAGGACTTGAAGAGTTACATGGCTTGGGCGGGGTTTCCGGCCACCGACGAAGACATCGACGCCATGATCCGATTCGGCGGCGGCCACCACAACGGCGGCGTCACCTTCGATGGTTTGCTTCGTATATTAGCGCTTGATTGTGCCGCcgctaattaa 483 0.6273 MCPSGRTLRPRASDFRPAFDVLDADRDGKISRDDLRAFYAGVHGGASGGDDVIGAMMTVADTNKDGFVEYEEFERVVAGNNAERKPVGCGAMEDVFRVMDKDGDGKLSHQDLKSYMAWAGFPATDEDIDAMIRFGGGHHNGGVTFDGLLRILALDCAAAN 160
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g0427 160 PANTHER CALMODULIN-RELATED PROTEIN 97A-LIKE 1 156 - -
Ssu6g0427 160 CDD EFh 93 153 IPR002048 GO:0005509
Ssu6g0427 160 ProSitePatterns EF-hand calcium-binding domain. 23 35 IPR018247 -
Ssu6g0427 160 ProSiteProfiles EF-hand calcium-binding domain profile. 92 122 IPR002048 GO:0005509
Ssu6g0427 160 CDD EFh 14 78 IPR002048 GO:0005509
Ssu6g0427 160 Pfam EF-hand domain pair 15 76 IPR002048 GO:0005509
Ssu6g0427 160 Gene3D - 7 157 - -
Ssu6g0427 160 ProSiteProfiles EF-hand calcium-binding domain profile. 10 45 IPR002048 GO:0005509
Ssu6g0427 160 ProSiteProfiles EF-hand calcium-binding domain profile. 48 83 IPR002048 GO:0005509
Ssu6g0427 160 ProSitePatterns EF-hand calcium-binding domain. 100 112 IPR018247 -
Ssu6g0427 160 Pfam EF hand 93 116 IPR002048 GO:0005509
Ssu6g0427 160 ProSitePatterns EF-hand calcium-binding domain. 61 73 IPR018247 -
Ssu6g0427 160 SUPERFAMILY EF-hand 13 152 IPR011992 -
Ssu6g0427 160 SMART efh_1 14 42 IPR002048 GO:0005509
Ssu6g0427 160 SMART efh_1 91 119 IPR002048 GO:0005509
Ssu6g0427 160 SMART efh_1 52 80 IPR002048 GO:0005509
Ssu6g0427 160 PANTHER CALCIUM BINDING PROTEIN 1 156 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g0427 1 152 EF-hand Containing Proteins AT5G49480 55.696 8.22e-56 171
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g0427 K02183 - gmx:100527230 267.7
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu6g0427 6 6641799 6642281 Ssu6g0427 6 6641799 6642281 ECH