Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g0422 ATGGAAAGGACGAACGAGTTCGTGCACTTCGACGTCGTTTTGGATGATTCAGATCATCACTTTCTGAATTCAAACCACGGAAAGCGCTTCAGCGATTCAAAGAGTGGAGTTTACCGCACCATCATGAAAGAGTGGAAAATCCTGGAGCAAAACCTACCCGAATCAATCTACGTGCGGGTCTACGAGCGGCGCATTGATCTAATGAGGGCCGTGATCGTAGGTGCCGCGGGCACACCGTACCACGATGGTCTCTTCTTCCTCGACATTATGTTCCCCTCTGATTACCCGAAGCACCCTCCGAAGCTGCATTTCCGCTCGTTCGGGCTCCGAGTCAACCCGAACCTCTACAACAACGGCAAAGTGTGCCTGAGCCTGCTCAACACGTGGCACGGGAAAAAGAGGGAGAAGTGGGACCCATCCGGGTCCACGTTGCTCCAGGTGCTGCTCTCCATCCAAGGACTCGTTCTCAACGAGAAACCCTTCTTTAACGAACCCGTCCTTGATGGGTTCGGGCGTTTCGCTTTCGGCTTAGAGACCAAGTCACGTGTCTACAACGAGACGGTGTTCACGCGCACTCTTAAGACCTCCTACTATCTGCTTCGGAGGCCGCCCCGGAACTTCGAACACTTCGTGAGTGCCCATTTTCGCAGGCGAGCGTTTTCTATTCTCGCGGCCTGCAACGCGTACGCGAGTGGGCGCGTGAGGGTTGGGCATTACTCGCGCGAGCTTCGTTCGTCTTCGTCGACGGTGGAAGTTTCGTGGGAGTTCAAGGAGAGGATGGTAGAGCTTTACCCTCAGCTTGTTCAAGCGTTTCGACGGAACGGTGCCTCTTTGGGTGGACACTTGGTGCTGGAAATCGGTGCGCAATCGGAAAACAAAAGCAGCGGGCAAAGGGAGCAATCCAAAAGGAAGGGCAGTGTAATCTTCAAGAGGGTCGTGGAAAAGATCAAACGGACTTTTGGATGgaagaaaaatggaaagaagAAAACTAGCGAGAATGATGGAAGAGATCGCAGTCTCGAAACTGCTTGA 1032 0.5242 MERTNEFVHFDVVLDDSDHHFLNSNHGKRFSDSKSGVYRTIMKEWKILEQNLPESIYVRVYERRIDLMRAVIVGAAGTPYHDGLFFLDIMFPSDYPKHPPKLHFRSFGLRVNPNLYNNGKVCLSLLNTWHGKKREKWDPSGSTLLQVLLSIQGLVLNEKPFFNEPVLDGFGRFAFGLETKSRVYNETVFTRTLKTSYYLLRRPPRNFEHFVSAHFRRRAFSILAACNAYASGRVRVGHYSRELRSSSSTVEVSWEFKERMVELYPQLVQAFRRNGASLGGHLVLEIGAQSENKSSGQREQSKRKGSVIFKRVVEKIKRTFGWKKNGKKKTSENDGRDRSLETA 343
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g0422 343 CDD UBCc 38 165 IPR000608 -
Ssu6g0422 343 SMART ubc_7 39 197 - -
Ssu6g0422 343 PANTHER UBIQUITIN-CONJUGATING ENZYME E2 38-RELATED 2 285 - -
Ssu6g0422 343 ProSiteProfiles Ubiquitin-conjugating (UBC) core domain profile. 36 197 IPR000608 -
Ssu6g0422 343 Pfam Ubiquitin-conjugating enzyme 41 164 IPR000608 -
Ssu6g0422 343 MobiDBLite consensus disorder prediction 323 343 - -
Ssu6g0422 343 PANTHER (E3-INDEPENDENT) E2 UBIQUITIN-CONJUGATING ENZYME 2 285 - -
Ssu6g0422 343 SUPERFAMILY UBC-like 30 204 IPR016135 -
Ssu6g0422 343 Gene3D Ubiquitin Conjugating Enzyme 1 275 IPR016135 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g0422 Ssu-Chr6 6562881 6563912 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g0422 7 290 Miscellaneous Gene Families AT2G33770 50.526 6.01e-78 254
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g0422 K10581 - gmx:100810844 464.922
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu6g0422 6 6562881 6563912 Ssu6g0422 6 6562881 6563912 ECH