Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g0408 ATGAACGCCCTCCCTTCTTCTTCGTCTTCCACCTTCTCTTTCTTCACTCAGTCCAAGAACCCCAACCACCTCTTCAAGTTCACgcttaaagtacccattttacCCCTACACTCTTCCCCTTCCCATCTCACTGCACCTGCTCCGTGTTGCTCTCTCAGCGACTCGTCCTCTTCGTCGACCAAGGTGCTGGACAAAAATGCCCTTTCACCCGAACAGAATTCCCGCAATGCAGTTTCACCAAAGGACTCAAGCTCTGAGGAGGTCCTCGTGGTTCGCCGGCCGGTGACGGATTTTTCCGGCGAAGACTCCGACGAGGAGGAAGAAGGGAAGGAGGCGGAGGACGATGACCCGAAGGCTTCGGCGATCGACGCTGGGCTTGCGAGATTCGCGAAGAAGATGCCGATGTTTGAGCCGGAGAGGGTCGAGTCCAAAGAGAGGCCCCTCACGGTGAATTTGGACTTGGCGTTATACAGGGCGAAGGTTTTGGCTAGAAGCTTTCGGTATGAAGAAGCAGAGACAATACTTCAAAAGTGTGTAAGCTATTGGCCGGAGGATGGTCGACCTTACGTGGTACTTGGAAAGATTTTGAGCAGGCAATCCAAAACAGGTCAGGCCAGGGAGATATACGAGAGGGGTTGCCAGGCGACTCAGAGTGAAAATGCCTACATTTGGCAGTGCTGGGCTGTTCTTGAAATGCAAATGGGGAATATCAGGAGAGCAAGACAGTTGTTTGATGCTGCCACAGTTGCTGATAAGAGGCACGTTGCTGCTTGGCATGGATGGGCAGTTCTAGAATTAAAGCAGGGAAATATAAAGAAGGCAAGGAGTCTGCTTGCTAAAGGTATTCAGTATTGTGGACAGAATGAGTACATATACCAAACACTTGCACTGCTTGAAGCTAGAGCAAATAGATATCAGCAGGCTCGATATTTATTCAATCAGGCCACTAAGTGTAATCCTAATAGTTGTGCTAGTTGGCTTGGTTGGGCACAGATGGAGGTGGAACAGGAAAACTACCGTGCTGCTAGGAAATTGTTTGAGAAAGCAGTACAGGCTAGTCCTAAAAATAGGTTTGCTTGGCATGTATGGGGCATTTTTGAAGCTAACATGGGCAACATTGACAAGGGAAGAAAACTTTTAAAGATAGGCCATACACTAAATCCGAGGGATGCTGTTCTACTTCAGTCTCTTGCTTTATTAGAATACCAACACTCGACTGCAAACCTTGCTCGGGTTTTGTTCAGGAGAGCATCTGAATTGGATCCAAGGCACCAACCTGTTTGGTTTGCTTGGGGTTGGATGGAATGGAAGGAAGGAAACTTGAATAAAGCTAGAGAATTATACCAAAAAACTTTATCAATTGATCCAAACAGTGACACTGCTGCCAGATGTCTCCAGGCTTGGGGTGTTCTGGAGCAGAGGGTTGGCAATCTTTCAGCTGCTCGTAGATTATTTAAATCCTCGTTGAATATAAATTCTCAGAGTTACGTGACATGGATGACTTGGGCATCACTGGAGGAAGATCAAGGAAATTCTGTGCGTGCTGAAGAGATTCGTAACCTCTATTTCCAACAGCGCACAGAAGTTGTAGATGATGCTTCATGGGTTATGGGATTCTTAGATATTTTAGACCCGGCCATTGACAGTTTAAAGAGACTCCTCAGGCTAGACCCAAATTCGTACAACATGCCACTGGATTCTTTGAAAAATTTTGCCGGAACAAATAAAAACAGAGCTGATTTTTCTAGTGACGACGACAACGATGATACTGCAAATGGTGAAAGTGACTTTGATTTGGATGCTTTCATTTTGGAAAGGCTATCCTTAGATTCGTCCAATCTAGAAGTTCAGTtggaaaaaccaaaattttcttCTGTGAGGAGAAGTACGTCTACTAGAAGGATATGGCGATCAAATAATAGAATTGCCAAAGTGTAA 1938 0.451 MNALPSSSSSTFSFFTQSKNPNHLFKFTLKVPILPLHSSPSHLTAPAPCCSLSDSSSSSTKVLDKNALSPEQNSRNAVSPKDSSSEEVLVVRRPVTDFSGEDSDEEEEGKEAEDDDPKASAIDAGLARFAKKMPMFEPERVESKERPLTVNLDLALYRAKVLARSFRYEEAETILQKCVSYWPEDGRPYVVLGKILSRQSKTGQAREIYERGCQATQSENAYIWQCWAVLEMQMGNIRRARQLFDAATVADKRHVAAWHGWAVLELKQGNIKKARSLLAKGIQYCGQNEYIYQTLALLEARANRYQQARYLFNQATKCNPNSCASWLGWAQMEVEQENYRAARKLFEKAVQASPKNRFAWHVWGIFEANMGNIDKGRKLLKIGHTLNPRDAVLLQSLALLEYQHSTANLARVLFRRASELDPRHQPVWFAWGWMEWKEGNLNKARELYQKTLSIDPNSDTAARCLQAWGVLEQRVGNLSAARRLFKSSLNINSQSYVTWMTWASLEEDQGNSVRAEEIRNLYFQQRTEVVDDASWVMGFLDILDPAIDSLKRLLRLDPNSYNMPLDSLKNFAGTNKNRADFSSDDDNDDTANGESDFDLDAFILERLSLDSSNLEVQLEKPKFSSVRRSTSTRRIWRSNNRIAKV 645
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g0408 645 PANTHER PROTEIN HIGH CHLOROPHYLL FLUORESCENT 107 5 640 IPR044624 GO:0003729|GO:0006397
Ssu6g0408 645 SMART hat_new_1 200 233 IPR003107 GO:0006396
Ssu6g0408 645 SMART hat_new_1 269 301 IPR003107 GO:0006396
Ssu6g0408 645 SMART hat_new_1 337 369 IPR003107 GO:0006396
Ssu6g0408 645 SMART hat_new_1 439 474 IPR003107 GO:0006396
Ssu6g0408 645 SMART hat_new_1 405 437 IPR003107 GO:0006396
Ssu6g0408 645 SMART hat_new_1 235 267 IPR003107 GO:0006396
Ssu6g0408 645 SMART hat_new_1 303 335 IPR003107 GO:0006396
Ssu6g0408 645 SMART hat_new_1 476 508 IPR003107 GO:0006396
Ssu6g0408 645 Gene3D Tetratricopeptide repeat domain 394 562 IPR011990 GO:0005515
Ssu6g0408 645 Gene3D Tetratricopeptide repeat domain 172 393 IPR011990 GO:0005515
Ssu6g0408 645 Pfam Tetratricopeptide repeat 427 457 IPR019734 GO:0005515
Ssu6g0408 645 SUPERFAMILY TPR-like 168 401 IPR011990 GO:0005515
Ssu6g0408 645 SMART tpr_5 186 219 IPR019734 GO:0005515
Ssu6g0408 645 SMART tpr_5 391 424 IPR019734 GO:0005515
Ssu6g0408 645 SMART tpr_5 323 356 IPR019734 GO:0005515
Ssu6g0408 645 SMART tpr_5 425 458 IPR019734 GO:0005515
Ssu6g0408 645 SMART tpr_5 152 185 IPR019734 GO:0005515
Ssu6g0408 645 SMART tpr_5 221 254 IPR019734 GO:0005515
Ssu6g0408 645 SMART tpr_5 255 288 IPR019734 GO:0005515
Ssu6g0408 645 SMART tpr_5 462 495 IPR019734 GO:0005515
Ssu6g0408 645 SMART tpr_5 357 390 IPR019734 GO:0005515
Ssu6g0408 645 SMART tpr_5 289 322 IPR019734 GO:0005515
Ssu6g0408 645 MobiDBLite consensus disorder prediction 47 120 - -
Ssu6g0408 645 ProSiteProfiles TPR repeat profile. 289 322 IPR019734 GO:0005515
Ssu6g0408 645 MobiDBLite consensus disorder prediction 47 83 - -
Ssu6g0408 645 Pfam Tetratricopeptide repeat 230 279 - -
Ssu6g0408 645 Pfam Tetratricopeptide repeat 295 356 - -
Ssu6g0408 645 ProSiteProfiles TPR repeat profile. 425 458 IPR019734 GO:0005515
Ssu6g0408 645 ProSiteProfiles TPR repeat profile. 323 356 IPR019734 GO:0005515
Ssu6g0408 645 SUPERFAMILY TPR-like 377 561 IPR011990 GO:0005515
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g0408 - - gmx:100819232 1050.04
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu6g0408 6 6389089 6393200 Ssu6g0408 6 6389089 6393200 ECH