Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Ssu6g0400 | ATGGCGGAGAAACATAACCTCAAGAACCCAGGGGTGAAGCGGATTCTTCAAGAGGTCAAGGAGATGCAATCAAACCCTTCAGATGACTACATGAGCCTCCCTCTTGAGgaaaatatatttgaatggcAATTTGCAATTAGGGGGCCTGCTGACAGTGAATTTGAGGGTGGTATTTATCACGGACGGATCCAGTTGCCTTCAGAATATCCCTTCAAACCTCCTTCATTTATGTTGCTGACAGCTAATGGTCGTTTTGAGACCCAAACCAAGATTTGCTTGAGCATATCAAATCATCACCCTGAGCATTGGCAACCATCATGGAGCGTAAGGACTGCTCTAGTTGCTTTGATTGCATTCATGCCCACCAGTCCAAATGGTGCGCTAGGCTCGTTAGACtacaagaaagaagagagacgTGCCCTGGCCATTAAATCCCGTCAAGCAGCTCCAAGATTTGGGACTCCTGAACGTCAAAAACTGATTGATGAGATACACGAGTATATGCTAGGCAAGTCATCCCCTGTTCCAAAGCTTGGCCCCTCACAAGCTTCTGAAGAACAATCCCAAACTGAGGAGGCCGAGACTCAGGTTAATTTGCAAAACCCTGAGGCCTTACCTGCAGGAGAGGGGATTCCAAATCAAGCAGGTGATAGAATAGTTGAAGAACAAGAACTCCCTATCAATGCTAATCCTAACCCTGCAGGAGTTGAAACTTCAATGGAGAATCGATCCAGTGTCTCAAACAACCAGTTGCCCCAAAAGTCGGATGCAAGGGTTCAAAATCTGAAACCACAAACAAGAGTTCAAAAACCTGACGATCGATTGTTCACATTGGCAGCTATTGGACTTACTGTAGCCATTGTAGTCCTTTTGTTGAAGAAGTTCATTAAATCTACGGAATATGGTGCTGTTTTCATGGATGAGTCTTAG | 930 | 0.4355 | MAEKHNLKNPGVKRILQEVKEMQSNPSDDYMSLPLEENIFEWQFAIRGPADSEFEGGIYHGRIQLPSEYPFKPPSFMLLTANGRFETQTKICLSISNHHPEHWQPSWSVRTALVALIAFMPTSPNGALGSLDYKKEERRALAIKSRQAAPRFGTPERQKLIDEIHEYMLGKSSPVPKLGPSQASEEQSQTEEAETQVNLQNPEALPAGEGIPNQAGDRIVEEQELPINANPNPAGVETSMENRSSVSNNQLPQKSDARVQNLKPQTRVQKPDDRLFTLAAIGLTVAIVVLLLKKFIKSTEYGAVFMDES | 309 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Ssu6g0400 | 309 | SUPERFAMILY | UBC-like | 12 | 134 | IPR016135 | - | |
| Ssu6g0400 | 309 | MobiDBLite | consensus disorder prediction | 177 | 202 | - | - | |
| Ssu6g0400 | 309 | MobiDBLite | consensus disorder prediction | 226 | 266 | - | - | |
| Ssu6g0400 | 309 | MobiDBLite | consensus disorder prediction | 232 | 266 | - | - | |
| Ssu6g0400 | 309 | Pfam | Ubiquitin-conjugating enzyme | 14 | 125 | IPR000608 | - | |
| Ssu6g0400 | 309 | SMART | ubc_7 | 13 | 173 | - | - | |
| Ssu6g0400 | 309 | Gene3D | Ubiquitin Conjugating Enzyme | 1 | 173 | IPR016135 | - | |
| Ssu6g0400 | 309 | ProSiteProfiles | Ubiquitin-conjugating (UBC) core domain profile. | 10 | 173 | IPR000608 | - | |
| Ssu6g0400 | 309 | CDD | UBCc | 12 | 147 | IPR000608 | - | |
| Ssu6g0400 | 309 | PANTHER | BNAC01G21910D PROTEIN | 6 | 309 | - | - | |
| Ssu6g0400 | 309 | MobiDBLite | consensus disorder prediction | 171 | 213 | - | - | |
| Ssu6g0400 | 309 | PANTHER | UBIQUITIN-CONJUGATING ENZYME E2 | 6 | 309 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Ssu6g0400 | Ssu-Chr6 | 6328709 | 6330582 | Dispersed/Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Ssu6g0400 | 3 | 308 | Miscellaneous Gene Families | AT3G17000 | 61.830 | 8.07e-134 | 380 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Ssu6g0400 | K10578 | - | gmx:100804054 | 549.666 |
Event-related genes