Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g0393 ATGAGTTCCCTGAAATTTTGCCGCCGATGCAACAACGTTCTGTACCCTAAGGAGGACAAGGACCTCAAGGTTCTTCTCTACGCTTGCCGCAACTGCGATCACgagGAGCTTGCAGATAATAACATTGTCTATAGAAATAAGATACATCATTCTGTTCAACGGCGCACTCAAGAGCTGGAAAATGTAGCCGCAGATCCAACACTTCCGCGCACCAAGTCTGTTCGCTGCTCTCAATGCAATCACGGAGAAGCTGTTTTTTTCCAGGCACCGGTCAAAGGCGAAGAAGGCATGGCACTCATTTTTGTTTGCTGCAACCCAACTTGTGGCAACCGTTGGAGAGACTAG 345 0.4783 MSSLKFCRRCNNVLYPKEDKDLKVLLYACRNCDHEELADNNIVYRNKIHHSVQRRTQELENVAADPTLPRTKSVRCSQCNHGEAVFFQAPVKGEEGMALIFVCCNPTCGNRWRD 114
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g0393 114 ProSiteProfiles Zinc finger TFIIS-type profile. 72 113 IPR001222 GO:0003676|GO:0006351|GO:0008270
Ssu6g0393 114 CDD Zn-ribbon_RPB9 64 113 IPR034012 GO:0006379
Ssu6g0393 114 Pfam Transcription factor S-II (TFIIS) 75 113 IPR001222 GO:0003676|GO:0006351|GO:0008270
Ssu6g0393 114 Pfam RNA polymerases M/15 Kd subunit 4 38 IPR001529 GO:0006351
Ssu6g0393 114 PIRSF RNApol_RpoM 4 114 IPR012164 GO:0006351
Ssu6g0393 114 Gene3D - 47 114 - -
Ssu6g0393 114 SMART Cys4_2 74 114 IPR001222 GO:0003676|GO:0006351|GO:0008270
Ssu6g0393 114 SUPERFAMILY Zinc beta-ribbon 53 114 - -
Ssu6g0393 114 PANTHER DNA-DIRECTED RNA POLYMERASE 1 114 IPR012164 GO:0006351
Ssu6g0393 114 SUPERFAMILY Zinc beta-ribbon 1 48 - -
Ssu6g0393 114 PANTHER DNA-DIRECTED RNA POLYMERASE SUBUNIT 1 114 - -
Ssu6g0393 114 Gene3D - 1 46 - -
Ssu6g0393 114 SMART rpol9cneu 5 58 IPR001529 GO:0006351
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g0393 Ssu-Chr6 6271686 6275650 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g0393 K03017 - gmx:100806190 228.024
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu6g0393 6 6271686 6275650 Ssu6g0393 6 6271686 6275650 ECH
Ssu6g0393 6 6271686 6275650 Ssu1g1246 1 27585160 27587269 PCT