Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g0390 ATGGGAGCGCCAGAGAAATCACAGGCAAACGCGAATTCGATGCAGCGTGTCAAGGTATATCGTCTGAATGACGATGGGAAATGGGATGACCAGGGTACTGGACATGTCACTGTTGATTATTTAGAGCGATCAGAAGAGCTGGGCTTATTTGTTTATGATGAAGATGACAATGAGACCATACTTTTGCATCGCATCAGTTCTGAAGACATTTATAGGAAACAAGAAGATACAATCATCTCATGGAGAGATCCAGAATATGCTACTGAACTGGCACTTAGCTTTCAAGAACCTAGTGGCTGCTCTTACATATGGGACCATATTTGCAACGTGCAGAGGAATATgcattttaatactttaaataATGAGCCATTTCACAGTGCCAACGGTGAGCCAAGAGAGTTGCCTGCTGTCGGTCTATCAACACTCCCTTTGATTCTAAAGACTGTGGTTGACAGTGGCTTTGCAGATCAGTTGCGGCTTACAGAACTGATATTAAGTGATCAAGAGTTTTTTTGCAAGCTGATGGAAGTATTCAGAATGTGTGAAGACTTGGAAAATATGGATGGTCTTCAcatgattttcaaaatagtcAAAGGGATAATTTTGCTAAATAGTCCAGCAATTTTTGAGAGAATTTTTAGTGACGACTTTATAGCGGACATTATTGGTGCCCTTGAGTATGATCCAGAGGTTCCTTGTGTTCAACATCATCGTAAATTCTTAAAGGAGCATGTTGTTTTTAAGGAGGCTATACCTATAAAAGATCCCGTTGTGTTGTCAAAGATACATCAAACATATAGAGTTGGCTTTTTGAAGGATGTTGTTCTGGCTAGAATCTTGGATGAGGGTATTGGTGCAAATCTTAACTCCATAATACATTCAAACAATGCCTTTGTTGTctctttgttgaaggatgaCAGTACATTTATCCAGGAGTTGTTTGCTAGGCTAAAATCACCCACCACCTCTCAAGAATCAAAGAAGAACTTGGTCTATTTCTTGCATGAGTTTTGTAGTTTGAGCAAGAGCTTGCAGATGGTCCAGCAGCTTCGGCTTTTTAGGGATCTAATGAATGAAGGCATCTTTGAAGTTGTCACCAATGTTTTGCAAAGTCAAGACAAAAAGCTAGTGCTAACTGGAACAGATATCCTCATTCTTTTCTTGAATCAGGATCCTAATCTTCTGCGATCCTATTTTGTTCGGCCGGAAGGAATTGCTCTTCTAGGACTTCTGGTTAAAGGAATGCTAACGGATTTTGGAGAGAACATGCACTGCCAGTTTCTTGAAATTCTTCGCAGTTTATTGGACTCATGCACATTGTCTGGACCACAGAGGGACACTATTATTGACATATTCTTTGAGAGGCATTTGGGGCAACTGGTTGAGGTTATAACAGCATCTTGTCCTTCAGAAAATACTGCTGATGCAAGTGGCAAATCAATAGGTCCTGCACAAAGAGTTCAGTGTCAGAGTGGAACAAAGCCGGAGATACTGTCAAACATATGTGAAATACTATGCTTTTGTGTCCTACATCACCCATACAGAATAAAGTGCAACTTTCTTCTTAATGAtgtgattgaaaaaatattgcTACTGACACGGAGAGCAGAAAGATACTTAGTTGTTGGTGCTGTCCGGTTCGTTCGAACTATTCTCTCTCGCCATGATGAGcatcttataaattattttgttaggaATAATGTTCTCAAACCAATTGTTGATGCCTTTGTTGTTAATGGCAATCGCTACAATCTGCTTCATTCTGCTGTTCTGGAACTATTTGAGTTTATTCGGAAGGAGAATCTGAAATTATTGCTGAAATACATAGTTGATTCTTTTTGGGATCAGCTGGGGAAATTTGAGTATTTGGCTTCAATTCACTCACTGAAAGTAAAATATGAGCAGTGTTTGGATAATGGTGGGACAAAAGATGCCGCTACTGTAGTGGACCTTCGAAGACGAAATGATGAGCGTGCTCtggagagagaagaagaacggTACTTTAATGAGGACAGTGATGAGGAGGATATTGCTTCTGCATCTGTTCCACGTAACCAGAAAGGATATCAACAGCTTAATCTATCCAATGGAGTTACTGCAAGCTATTCACAGTTAAGTCCGAGGTCACTGGTTGACTATGAGGATGACGAGGATGATGAAGATTACAAGCCACCGCCAAGGAAGCAGCCAGAAGCTTCTGAGGAAGATGATGGGATAATGGAGTCTCTCAGGCTGAAGAGGAAATTACCTTCAAAGGATAAGGAGCCTGAACTTGTGAAGAAACAGAagttatcaaagaattctaaaTCTAAAGATAGTGTTTTTGCTGCCTTGTGTTCAACATTGAGCCAAGCTGTGCTACCTAGTGAAAAAACATCAATCAACATTCCTACAAGTGCTCGAACAGTTGAGGGGAGCATGGGCTCAAGCGAAGATATTCAGGGAGATGTACAAAATATTTCTAGAAGCAGTTCCAATAATAGCAACATTGCAGCAGAAGATAATCATGTAGAGAAAGAAGCTGAAGCCTCCAGAAGCTTTTCTGATTGCTTGCATGCACAATCAGATAACATACCATTGGGTGGAGAAGAACGTCCATTGGTTACCCCAAAATCCTCACCAGAGATGGCTGTAAATGGATCGTAA 2646 0.3893 MGAPEKSQANANSMQRVKVYRLNDDGKWDDQGTGHVTVDYLERSEELGLFVYDEDDNETILLHRISSEDIYRKQEDTIISWRDPEYATELALSFQEPSGCSYIWDHICNVQRNMHFNTLNNEPFHSANGEPRELPAVGLSTLPLILKTVVDSGFADQLRLTELILSDQEFFCKLMEVFRMCEDLENMDGLHMIFKIVKGIILLNSPAIFERIFSDDFIADIIGALEYDPEVPCVQHHRKFLKEHVVFKEAIPIKDPVVLSKIHQTYRVGFLKDVVLARILDEGIGANLNSIIHSNNAFVVSLLKDDSTFIQELFARLKSPTTSQESKKNLVYFLHEFCSLSKSLQMVQQLRLFRDLMNEGIFEVVTNVLQSQDKKLVLTGTDILILFLNQDPNLLRSYFVRPEGIALLGLLVKGMLTDFGENMHCQFLEILRSLLDSCTLSGPQRDTIIDIFFERHLGQLVEVITASCPSENTADASGKSIGPAQRVQCQSGTKPEILSNICEILCFCVLHHPYRIKCNFLLNDVIEKILLLTRRAERYLVVGAVRFVRTILSRHDEHLINYFVRNNVLKPIVDAFVVNGNRYNLLHSAVLELFEFIRKENLKLLLKYIVDSFWDQLGKFEYLASIHSLKVKYEQCLDNGGTKDAATVVDLRRRNDERALEREEERYFNEDSDEEDIASASVPRNQKGYQQLNLSNGVTASYSQLSPRSLVDYEDDEDDEDYKPPPRKQPEASEEDDGIMESLRLKRKLPSKDKEPELVKKQKLSKNSKSKDSVFAALCSTLSQAVLPSEKTSINIPTSARTVEGSMGSSEDIQGDVQNISRSSSNNSNIAAEDNHVEKEAEASRSFSDCLHAQSDNIPLGGEERPLVTPKSSPEMAVNGS 881
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g0390 881 SUPERFAMILY ARM repeat 174 612 IPR016024 -
Ssu6g0390 881 PANTHER ATP SYNTHASE GAMMA-RELATED 1 817 - -
Ssu6g0390 881 MobiDBLite consensus disorder prediction 797 881 - -
Ssu6g0390 881 MobiDBLite consensus disorder prediction 797 832 - -
Ssu6g0390 881 Gene3D - 10 128 IPR011993 -
Ssu6g0390 881 MobiDBLite consensus disorder prediction 721 768 - -
Ssu6g0390 881 MobiDBLite consensus disorder prediction 662 689 - -
Ssu6g0390 881 Gene3D - 306 614 IPR011989 -
Ssu6g0390 881 SUPERFAMILY PH domain-like 15 111 - -
Ssu6g0390 881 MobiDBLite consensus disorder prediction 705 772 - -
Ssu6g0390 881 Pfam Phosphatase 4 regulatory subunit 3 168 356 IPR006887 -
Ssu6g0390 881 PANTHER BINDING PROTEIN-RELATED 1 817 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g0390 Ssu-Chr6 6203394 6225081 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g0390 K17491 - gmx:100808669 1586.24
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu6g0390 6 6203394 6225081 Ssu6g0390 6 6203394 6225081 ECH