Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g0378 ATGACCATCGACTTAGATTCGATCGCTCGCAAAGTCGAGGTTGATAATCGCATTCCCCTTCGCTATTACTATCGGATTGCCGATAACCTCCTCAAGCAGGCAAGTATCTACCGGGGGGAGGATAATGTAGTTGACTTGTACATCATTCTCCttagatttttaagTTTGGTTTCTGAAACTATACCATATCATCGAGATTATCAAGCTTCACTGCCCAACGAAAGAGCAGCATATAAGAAGAGATCGCGAGCTGTATTGGATGAGCTTGAATCTTTGAAGCCTGAATTTAAGTGCCGGTTGGAAAAATTGAATGACTCACATGTAAAAGCTCCATTACCTGAAGAAAATGGCTTCAATAAGGCTTTGCAGAGTTCAGTGCATTCTTCTTTGGAATGGCCGGCTGTCAATAGAAGTTATAACTCAAGCATGGATTTTAAACAGTCTGCTGGATTGGGTTCACTCTCTTCGtggaattataataatatgttatctTCAAATTCCAGGCCTATTGACAAGCAGTTTCAGAAACTATCTCTTAGTCTACCCCCTCCAAATAAGGAGACTCTGTCCAGACATTCATTTTTAGGACCAAATGGCCTTCGGGGCCAATGGCTTGGACCTAGTGCGGAAATAAAGGTTCAATATCCAAGCAGTAGTGATCTCACACATGTCAAGGATTCAAGCCTGAATCAGGCCGGGCAGTATGATCTTGTGGCAATTAAAGATGGTGATCAAGGACTAGTTACATCCACAATGGACTCAGTTCTCTCCTTGGATGATGGAAGATGGTTGAGTCCTGCTGTTGAGTCCTGTTCTGTTGTAACTGAATCAAGGGAGGACCCCTTACCATTGCTCAACATCAAGCAACCTTTGCCACCTCCTGTTCTTGCTCAGGTGTACCCAGAATGTGCCCCTATTCCTCCTTCAAAAGTTGCCGATCCAAGGCCAGGACCAGCTAAATCTTCTCATGATTCTGGACCTGGTCCAACTACATATCAACACCTACATATTCCTATCAAAATGATGGAAGATTTTTTAAGATTAGCTTCAGAAAACACACGGAAGAACTTGGAGACATGTGGTGTTCTTGCGGGGTCTCTGAAAAAAAGGGTATTCCATATCACGACACTTATAATCCCAAAGCAGGAAGCAACTTCAGACTCGTGTCAAACATTGAACGAAGAAGAAATATTTGAAGTTCAAGACAGCTTGTCACTTTTTCCTTTAGGTTGGATACATACACACCCGTCACAGACTTGTTTCATGTCTTCCGTGGATCTACACACTCATTACTCATACCAGATCATGTTACCAGAGGCAATTGCTATTGTCATGGCCCCTACAGATACTGCAAGTCCACATGGCATATTTCATCTGTCTGATCCGGGTGGTGTGTCTGTAATTCGTAACTGTCAACAACGTGGATTTCATCCGCATGAGGAGCCTTCGGAAGGAAGTCCAATATACGAGCACTGCTCTCATGTCTATATGAATGCTAACTTAAAGTTCAATGTTGTTGACCTTCGAGAGCGATGA 1536 0.4245 MTIDLDSIARKVEVDNRIPLRYYYRIADNLLKQASIYRGEDNVVDLYIILLRFLSLVSETIPYHRDYQASLPNERAAYKKRSRAVLDELESLKPEFKCRLEKLNDSHVKAPLPEENGFNKALQSSVHSSLEWPAVNRSYNSSMDFKQSAGLGSLSSWNYNNMLSSNSRPIDKQFQKLSLSLPPPNKETLSRHSFLGPNGLRGQWLGPSAEIKVQYPSSSDLTHVKDSSLNQAGQYDLVAIKDGDQGLVTSTMDSVLSLDDGRWLSPAVESCSVVTESREDPLPLLNIKQPLPPPVLAQVYPECAPIPPSKVADPRPGPAKSSHDSGPGPTTYQHLHIPIKMMEDFLRLASENTRKNLETCGVLAGSLKKRVFHITTLIIPKQEATSDSCQTLNEEEIFEVQDSLSLFPLGWIHTHPSQTCFMSSVDLHTHYSYQIMLPEAIAIVMAPTDTASPHGIFHLSDPGGVSVIRNCQQRGFHPHEEPSEGSPIYEHCSHVYMNANLKFNVVDLRER 511
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g0378 511 PANTHER AMSH-LIKE PROTEASE 3 509 - -
Ssu6g0378 511 SMART pad1_6 334 462 IPR000555 GO:0005515|GO:0008233|GO:0008237
Ssu6g0378 511 Pfam USP8 dimerisation domain 4 97 IPR015063 -
Ssu6g0378 511 Pfam JAB1/Mov34/MPN/PAD-1 ubiquitin protease 331 438 IPR000555 GO:0005515|GO:0008233|GO:0008237
Ssu6g0378 511 Gene3D Cytidine Deaminase, domain 2 319 511 - -
Ssu6g0378 511 PANTHER AMSH-LIKE UBIQUITIN THIOESTERASE 3 3 509 - -
Ssu6g0378 511 CDD MPN_AMSH_like 332 509 IPR044098 GO:0016579|GO:0061578|GO:0070536|GO:0140492
Ssu6g0378 511 SUPERFAMILY USP8 N-terminal domain-like 4 105 - -
Ssu6g0378 511 ProSiteProfiles MPN domain profile. 335 465 IPR037518 -
Ssu6g0378 511 Gene3D - 2 125 - -
Ssu6g0378 511 Coils Coil 86 106 - -
Ssu6g0378 511 MobiDBLite consensus disorder prediction 306 333 - -
Ssu6g0378 511 SUPERFAMILY JAB1/MPN domain 334 465 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g0378 Ssu-Chr6 6009710 6018494 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g0378 K11866 - gmx:100812784 933.324
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu6g0378 6 6009710 6018494 Ssu6g0378 6 6009710 6018494 ECH