Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g3505 ATGCCTCGCCCCAACTTgttgtttctctctctcattctctccctctctctctctctcttcctctccgTCGCTGCCCGCCACTTCGTCCTCGTCCTCTCGCAGGAAGACTTCAAGGACGACCCCCCCGCCGATCCCGACTCCGCGGCCGAGTGGGACGAGTTCGGCGACTCCGACGCCGACAAATCAGAGGACGACCTCGACCCCGGCTCATGGCGCCCCGTCTTCGAGCCCCCCGCCGGCGAACCCCAACCCCTCCCGGAATCCGAGGCCGCCTACTACTCCGGCGTCCACATGCTCATGTCCGGCGATCCCACCGTCATCGAAGACGGCGCCGCCGAGATCGCCGCGACGGCCGAAACGGGGTTCCCCCCGGCGCAATCGGTGCTAGGGTTTTTGTGGGGAATGGGGCTTTTGAGAGAGCGAAGCAAGGGGAAGGCCTTTCTGTACCACCACTTCGCCGCCGAGGGTGGCAACATGCAGTCCAAGATGGCTTTGGCTTACACCTACACGCGCCAAGATATGTTTGAGAAAGCTGTTAAACTGTATGCTGAATTGGCTGAAGTGGCTGTGAATAGTTTTCTGATTTCGAAAGATTCCCCTGTGATTGAACCCGTTAGGCTCCACAATGGGGCCGAGGAGAACAAGGAAGCTCTGAGAAAATCGAAAGGGGAAGAGGATGAGGACTTTCAGATACTGGAGTATCAGGCGCAGAAGGGAAATGCTGCTGCCATGTACAAAGTGGGACTCTTTTACTACTTTGGCCTCAGGGGATTGAGGCGCGATCATTCGAAGGCACTGTCATGGTTTTTGAAGGCTGTGGAGAAGGGAGAGCCAAGATCTATGGAGCTTCTTGGAGAGATCTATGCTAGAGGAGCAGGTGTTGAGAGAAACTACACCAAAGCGTTCGAGTGGCTCACACTTGCTTCCAGGCATCACCTCTATTCTGCTTATAATGGGGTGGGATATTTGTATGTCAAAGGCTATGGAGTTGACAAGAAGAATTACACTAAAGCGAAAGAGTATTTTGAAAAGGCGGCGGAGAATGATGAGGTTGGTGGGCACTATAACCTGGGTGTCATGTATCTCAAGGGGATTGGAGTGAAAAGGGATGTTAAGCTGGCGTGTAAGTTCTTTGTGGTGGCTGCTAACCATGGTCAACCAAAGGCGTTCTACCAGCTGGCTAAGATTTTCCATATTGGTGTTGGGTTCAAGAAGAATATTCCCTTGGCTACTGCACTGTACAAACTAGTTGCAGAGCGGGGTCCATGGAGTTCTTTGTCTAGATGGGCTCTAGAATCATACTTAAAAGGTGAATTGGGCAAGGCATTTATGTTGTATTCAAGAATGGCTGAGATGGGGTATGAGGTGGCACAAAGTAATGCTGCTTGGATTCTGGACAAATATGGGGAACGTAGCATGTGCATGGGTGAATCTGGATTTTGCACTGATGCAGAAAGGCATCAACGGGCACATTCTCTGTGGTGGCAAGCTTCTGAGCAGGGTAATGAACATGCTGCTTTACTCATTGGAGATGCGTATTACTATGGTCGGGGTACTGCCAGGGATTATGAGCGAGCTGCTGAGGCTTACATGCATGCTAAATCACAATCTAATGCACAAGCAATGTTCAATCTTGGATACATGCATGAGCATGGCCAAGGACTTCCATTTGACCTTCATCTAGCCAAGCGTTACTATGATGAAGCTTTAGAGCATGATCATGCAGCGAAGTTGCCAGTCACGCTGGCTCTTTCAAGCTTGTGGGTTCGTAAGAACTATGCTGACAGTTTCTTGGTCCACGTGATTGATTCATTGCCAGAACTCTATCCTAAATTAGAAGCTTGGGTGGAGAATGTGCTTTTGGAGGAGGGAAATGCTACAATTCTTACTCTCTTTGCATGCCTCCTAACTGTGCTCTATCTCCGCGAGAGACAACGAAGGCAAGCTGCTGTTATAGCTGGAGAGGTTGCTCAGCCAAATCGCCCCAACGAGCTTGGTGTACCCGCCGCGCCCATTTAG 2019 0.4983 MPRPNLLFLSLILSLSLSLFLSVAARHFVLVLSQEDFKDDPPADPDSAAEWDEFGDSDADKSEDDLDPGSWRPVFEPPAGEPQPLPESEAAYYSGVHMLMSGDPTVIEDGAAEIAATAETGFPPAQSVLGFLWGMGLLRERSKGKAFLYHHFAAEGGNMQSKMALAYTYTRQDMFEKAVKLYAELAEVAVNSFLISKDSPVIEPVRLHNGAEENKEALRKSKGEEDEDFQILEYQAQKGNAAAMYKVGLFYYFGLRGLRRDHSKALSWFLKAVEKGEPRSMELLGEIYARGAGVERNYTKAFEWLTLASRHHLYSAYNGVGYLYVKGYGVDKKNYTKAKEYFEKAAENDEVGGHYNLGVMYLKGIGVKRDVKLACKFFVVAANHGQPKAFYQLAKIFHIGVGFKKNIPLATALYKLVAERGPWSSLSRWALESYLKGELGKAFMLYSRMAEMGYEVAQSNAAWILDKYGERSMCMGESGFCTDAERHQRAHSLWWQASEQGNEHAALLIGDAYYYGRGTARDYERAAEAYMHAKSQSNAQAMFNLGYMHEHGQGLPFDLHLAKRYYDEALEHDHAAKLPVTLALSSLWVRKNYADSFLVHVIDSLPELYPKLEAWVENVLLEEGNATILTLFACLLTVLYLRERQRRQAAVIAGEVAQPNRPNELGVPAAPI 672
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g3505 672 MobiDBLite consensus disorder prediction 46 63 - -
Ssu5g3505 672 PANTHER ERAD-ASSOCIATED E3 UBIQUITIN-PROTEIN LIGASE COMPONENT HRD3A-RELATED 6 653 - -
Ssu5g3505 672 Gene3D Tetratricopeptide repeat domain 203 315 IPR011990 GO:0005515
Ssu5g3505 672 SUPERFAMILY HCP-like 222 348 - -
Ssu5g3505 672 SUPERFAMILY HCP-like 434 575 - -
Ssu5g3505 672 MobiDBLite consensus disorder prediction 36 87 - -
Ssu5g3505 672 PANTHER ERAD-ASSOCIATED E3 UBIQUITIN-PROTEIN LIGASE COMPONENT HRD3A-RELATED 6 653 IPR044623 GO:0030433
Ssu5g3505 672 SUPERFAMILY HCP-like 118 188 - -
Ssu5g3505 672 SUPERFAMILY HCP-like 332 463 - -
Ssu5g3505 672 Gene3D Tetratricopeptide repeat domain 316 431 IPR011990 GO:0005515
Ssu5g3505 672 Gene3D Tetratricopeptide repeat domain 89 197 IPR011990 GO:0005515
Ssu5g3505 672 Gene3D Tetratricopeptide repeat domain 432 594 IPR011990 GO:0005515
Ssu5g3505 672 Pfam Sel1 repeat 279 311 IPR006597 -
Ssu5g3505 672 Pfam Sel1 repeat 354 385 IPR006597 -
Ssu5g3505 672 Pfam Sel1 repeat 441 454 IPR006597 -
Ssu5g3505 672 Pfam Sel1 repeat 241 276 IPR006597 -
Ssu5g3505 672 Pfam Sel1 repeat 315 349 IPR006597 -
Ssu5g3505 672 Pfam Sel1 repeat 539 574 IPR006597 -
Ssu5g3505 672 Pfam Sel1 repeat 505 527 IPR006597 -
Ssu5g3505 672 Pfam Sel1 repeat 125 158 IPR006597 -
Ssu5g3505 672 SMART sel1 351 386 IPR006597 -
Ssu5g3505 672 SMART sel1 278 313 IPR006597 -
Ssu5g3505 672 SMART sel1 503 538 IPR006597 -
Ssu5g3505 672 SMART sel1 314 350 IPR006597 -
Ssu5g3505 672 SMART sel1 387 422 IPR006597 -
Ssu5g3505 672 SMART sel1 241 277 IPR006597 -
Ssu5g3505 672 SMART sel1 123 158 IPR006597 -
Ssu5g3505 672 SMART sel1 539 574 IPR006597 -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g3505 K14026 - gmx:100787823 1198.73
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu5g3505 5 85979920 85984199 Ssu5g3505 5 85979920 85984199 ECH