Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g3502 atgatcACGTTAACCGACTTCTACCATGTGATGACCGCAATGGTGCCACTGTACGTGGCCATGATACTGGCGTACGGTTCCGTGAAATGGTGGAAAATCTTCTCCCCGGACCAATGCTCCGGCATCAACCGGTTCGTGGCTCTGTTCGCGGTCCCTCTGCTGTCGTTCCACTTCATCGCTTCCAACAACCCGTACGAAATGAACTTCCGGTTCATCGCGGCGGACACGCTCCAGAAGATCATCGTGCTGGTGGTCCTGGCCGTCTGGACGAACGTGAGCAAGAAAGGGTGTTTGGAGTGGACCATAACCCTGTTCTCCATCTCCACCCTCCCAAACACGCTCGTCATGGGCATCCCCTTACTGAAGGGCATGTACGGCGACTTCTCCGGGAGCCTCATGGTCCAAATTGTGGTCCTCCAGTGCATCATCTGGTACACCCTCATGCTCTTCTTGTTCGAGTACAGAGGCGCCAGAATGCTCATCTCTGAGCAGTTCCCAGACACCGCCGCTACCATTGTCTCCATCCATGTCGACTCTGACGTCATGTCGCTCGACGGACGACAGCCCTTGGAAACCGAAGCCGAAATCAAAGAGGACGGGAAACTTCACGTCACCGTCAGAAAATCCAACGCTTCCAGATCCGACATCTTTTCTAGAAGGTCCCAGGGGCTCTCTTCCACCACCCCTCGCCCTTCCAACCTCACCAATGCAGAGATTTACTCTCTTCAATCCTCCAGGAACCCTACTCCACGTGGCTCCAGCTTCAACCACACCGATTTTTATTCCATGATGGCTGCTGGTCGTAATTCTAACTTCGGTGCCTCTGATGTTTATGGCCTCTCTGCTTCCAGAGGACCCACTCCGAGGCCTTCGAATTACGACGAGGATGCTTCCGCCGCTGGGAAGCCCAGGTACCACTACCCTGCTGCTGGAACAGGAACAGGAACAGGACACTACCCTGCACCTAACCCTGGCATGTTCTCTCCCACCGCGTCTAAAAATGTAGCCAATGGTCCCAAGAAGCCCAATGGTCAGGCCCAGCCCAAGCCAGACGATCCCAATAAGGACCTTCACATGTTCGTTTGGAGTTCAAGCGCTTCCCCTGTTTCGGATGTGTTTGCTGGACATGAATACGGAGCTCATGATCACAAAGAAGTGAAGTTAACTGTATCTCCCGgaaaagTGGAGGGTAACAGAGACGGTCAAGAGGAGTACCTAGAGAAGGATGATTTTAGTTTCGGAAACAGAGGGATTGAGAACCAGCATGAAGGTGAGAAAGTTGGGAACGGCAATCCAAAAACTATGCCCCGGCGAGTGTGGAACGTTGAAATGCCTGCCATAATTGCCAAGTCTATTTCCATATTGTCAGATGCAGGGCTTGGGATGGCCATGTTTAGTCTCGGTCTGTTCATGGCTTTGCAACCGAGGATCATAGCATGTGGAAATTCCGTAGCAGCTTTTTCTATGGCCGTGAGATTCCTTACAGGTCCAGCTGTCATGGCAGCTGCTTCCATTGCTGTTGGACTCAAAGGCGTTCTCTTACACGTTGCCATTGTTCAGGCAGCTCTTCCCCAAGGGATTGTCCCATTTGTCTTTGCCAAGGAATACAATGTACATCCTGATATTCTCAGTACGGgCGTTATTTTTGGGATGTTGATTGCATTGCCCATAACGCTTGTGTACTACATCTTGCTGGGGTTATGA 1704 0.5147 MITLTDFYHVMTAMVPLYVAMILAYGSVKWWKIFSPDQCSGINRFVALFAVPLLSFHFIASNNPYEMNFRFIAADTLQKIIVLVVLAVWTNVSKKGCLEWTITLFSISTLPNTLVMGIPLLKGMYGDFSGSLMVQIVVLQCIIWYTLMLFLFEYRGARMLISEQFPDTAATIVSIHVDSDVMSLDGRQPLETEAEIKEDGKLHVTVRKSNASRSDIFSRRSQGLSSTTPRPSNLTNAEIYSLQSSRNPTPRGSSFNHTDFYSMMAAGRNSNFGASDVYGLSASRGPTPRPSNYDEDASAAGKPRYHYPAAGTGTGTGHYPAPNPGMFSPTASKNVANGPKKPNGQAQPKPDDPNKDLHMFVWSSSASPVSDVFAGHEYGAHDHKEVKLTVSPGKVEGNRDGQEEYLEKDDFSFGNRGIENQHEGEKVGNGNPKTMPRRVWNVEMPAIIAKSISILSDAGLGMAMFSLGLFMALQPRIIACGNSVAAFSMAVRFLTGPAVMAAASIAVGLKGVLLHVAIVQAALPQGIVPFVFAKEYNVHPDILSTGVIFGMLIALPITLVYYILLGL 567
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g3502 567 Pfam Membrane transport protein 440 562 IPR004776 GO:0016021|GO:0055085
Ssu5g3502 567 Pfam Membrane transport protein 9 247 IPR004776 GO:0016021|GO:0055085
Ssu5g3502 567 MobiDBLite consensus disorder prediction 213 235 - -
Ssu5g3502 567 MobiDBLite consensus disorder prediction 413 434 - -
Ssu5g3502 567 MobiDBLite consensus disorder prediction 327 341 - -
Ssu5g3502 567 PANTHER AUXIN EFFLUX CARRIER COMPONENT 1A 1 425 - -
Ssu5g3502 567 PANTHER AUXIN EFFLUX CARRIER COMPONENT 1A 440 567 - -
Ssu5g3502 567 PANTHER AUXIN EFFLUX CARRIER COMPONENT 1B-RELATED 1 425 - -
Ssu5g3502 567 PANTHER AUXIN EFFLUX CARRIER COMPONENT 1B-RELATED 440 567 - -
Ssu5g3502 567 MobiDBLite consensus disorder prediction 281 358 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g3502 Ssu-Chr5 85922849 85926116 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu5g3502 1 558 Organic Solute Cotransporters AT1G73590 67.576 0.0 773
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g3502 K13947 - gmx:100786572 999.579
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu5g3502 5 85922849 85926116 Ssu5g3502 5 85922849 85926116 ECH