Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g3493 ATGGCCATGCCCATGGGCTCAACGCTGAGACTGAGACCGCTTCTCGCCACCCTCTTCTTCCTCATCTCCTACATTCCCGTCCTGAAGGTTTCAGCTGCATCAGTGATACTGTACAACAAGTGCCCGCACCCAGTGTGGCCCGGGATCCAGCCCAGCGCAGGAAAGCCCATTCTGGCCCGCGGAGGCTTCAAGCTCCCCCCAAACCGGGCCCACTCCCTCCAACTCCCGGCCCTCTGGTCCGGACGCTTCTGGGGCCGCCACGGCTGCGCCTTCGACGCCTCCGGTCGCGGCCGCTGCGCCACCGGCGACTGCGGTGGCTCCCTGTTCTGCAACGGCATCGGCGGGACCCCGCCGGCTACCCTGGCGGAGTTCACCCTCGGCAACGAGCAGGACTTCTACGACGTGAGCCTGGTCGACGGCTACAACCTCCCCATCTCCATCACCCCCTTCAAGGGATCTGGGAAATGCAGCTACGCGGGCTGCGTCAGCGACCTCAACACCATGTGCCCCGTGGGCCTCCAGGTCCGCTCACGCGATAACAAGCGCGTGGTGGCCTGCAAGAGCGCCTGCTCTGCTTTTAACTCCCCCAGGTACTGCTGCACCGGCTCCTATGGAAGCCCACAGGCCTGCAAGCCCACAGTGTATTCCAGGATCTTCAAGACCGCATGCCCCAAGGCCTACTCCTATGCCTACGATGACCCTACCAGCATCGCTACTTGCACTAAAGCTAACTATTTGGTCACTTTCTGCCCCCATCGCCGCTGA 765 0.6301 MAMPMGSTLRLRPLLATLFFLISYIPVLKVSAASVILYNKCPHPVWPGIQPSAGKPILARGGFKLPPNRAHSLQLPALWSGRFWGRHGCAFDASGRGRCATGDCGGSLFCNGIGGTPPATLAEFTLGNEQDFYDVSLVDGYNLPISITPFKGSGKCSYAGCVSDLNTMCPVGLQVRSRDNKRVVACKSACSAFNSPRYCCTGSYGSPQACKPTVYSRIFKTACPKAYSYAYDDPTSIATCTKANYLVTFCPHRR 254
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g3493 254 SUPERFAMILY Osmotin, thaumatin-like protein 35 252 IPR037176 -
Ssu5g3493 254 Pfam Thaumatin family 39 251 IPR001938 -
Ssu5g3493 254 PIRSF PR5 1 254 IPR001938 -
Ssu5g3493 254 CDD TLP-PA 37 250 - -
Ssu5g3493 254 ProSitePatterns Thaumatin family signature. 95 110 IPR017949 -
Ssu5g3493 254 PRINTS Pathogenesis-related protein signature 131 147 IPR001938 -
Ssu5g3493 254 PRINTS Pathogenesis-related protein signature 82 93 IPR001938 -
Ssu5g3493 254 PRINTS Pathogenesis-related protein signature 34 46 IPR001938 -
Ssu5g3493 254 PRINTS Pathogenesis-related protein signature 95 124 IPR001938 -
Ssu5g3493 254 PRINTS Pathogenesis-related protein signature 241 250 IPR001938 -
Ssu5g3493 254 SMART tha2 35 251 IPR001938 -
Ssu5g3493 254 Gene3D Thaumatin 33 251 IPR037176 -
Ssu5g3493 254 PANTHER OS03G0233200 PROTEIN 22 253 IPR001938 -
Ssu5g3493 254 ProSiteProfiles Thaumatin family profile. 32 253 IPR001938 -
Ssu5g3493 254 PANTHER THAUMATIN-LIKE PROTEIN 22 253 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g3493 Ssu-Chr5 85829920 85830684 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu5g3493 15 252 Receptor kinase-like Gene Family AT5G38280 44.898 1.66e-65 213
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g3493 - - gmx:100784636 486.493
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu5g3493 5 85829920 85830684 Ssu5g3493 5 85829920 85830684 ECH