Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g3490 ATGGCTGATGCATTTGATGAAGAGTGTGATTATCTCTTCAAGGCTGTTCTGATTGGAGACTCTGGAGTTGGGAAATCAAATCTGCTCTCAAGGTTTGCAAAAGATGAATTCCGCTTGGATTCCAAACCCACCATAGGAGTGGAATTTGCTTACCGGAACATCAAGGTTGGAGATAAACTCATCAAAGCCCAAATATGGGACACTGCCGGCCAAGAAAGGTTTAGAGCAATCACCAGTTCATACTACCGAGGAGCCTTAGGGGCATTGCTTGTGTATGACATAACCATGAGATCTAGTTATGAGAATGTAAGCAAATGGTTACTAGAGCTGAGAGAGTTTGGAGGCCAAGACATGGTGGTTGTTCTGGTGGGAAACAAATGTGATTTGGATCAATCAAGAGaagttgagaaagaagaaggaaaagggtTTGCGGAAACAGAAGGATTATGTTTCATGGAAACCTCTGCTTTGAAGAATCTGAATGTTGAGGAAGTTTTCTTACAAATGATCACAAGGATTTATGACATGACAAGCCAGAAAAGTTTGGCAGCCAAAATGGACGAGAAACCAATTAATCTTTTGAATGGGAAGGAGATCCATATAGCTGATGAAGTGACTGCAACTAAACAAGCTAGTACTTGCTGTTCAAGATGA 654 0.3976 MADAFDEECDYLFKAVLIGDSGVGKSNLLSRFAKDEFRLDSKPTIGVEFAYRNIKVGDKLIKAQIWDTAGQERFRAITSSYYRGALGALLVYDITMRSSYENVSKWLLELREFGGQDMVVVLVGNKCDLDQSREVEKEEGKGFAETEGLCFMETSALKNLNVEEVFLQMITRIYDMTSQKSLAAKMDEKPINLLNGKEIHIADEVTATKQASTCCSR 217
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g3490 217 PANTHER DRAB5-RELATED 1 216 - -
Ssu5g3490 217 SMART rho_sub_3 15 176 IPR001806 GO:0003924|GO:0005525
Ssu5g3490 217 SMART ras_sub_4 10 176 - -
Ssu5g3490 217 ProSiteProfiles small GTPase Rho family profile. 6 174 - -
Ssu5g3490 217 Pfam Ras family 14 174 IPR001806 GO:0003924|GO:0005525
Ssu5g3490 217 PRINTS Transforming protein P21 ras signature 36 52 - -
Ssu5g3490 217 PRINTS Transforming protein P21 ras signature 13 34 - -
Ssu5g3490 217 PRINTS Transforming protein P21 ras signature 54 76 - -
Ssu5g3490 217 PRINTS Transforming protein P21 ras signature 151 173 - -
Ssu5g3490 217 PRINTS Transforming protein P21 ras signature 116 129 - -
Ssu5g3490 217 TIGRFAM small_GTP: small GTP-binding protein domain 12 166 IPR005225 GO:0005525
Ssu5g3490 217 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 8 190 IPR027417 -
Ssu5g3490 217 CDD Rab11_like 10 174 - -
Ssu5g3490 217 SMART rab_sub_5 13 176 - -
Ssu5g3490 217 SMART ran_sub_2 18 208 - -
Ssu5g3490 217 ProSiteProfiles small GTPase Ras family profile. 7 217 IPR001806 GO:0003924|GO:0005525
Ssu5g3490 217 ProSiteProfiles small GTPase Rab1 family profile. 8 215 - -
Ssu5g3490 217 PANTHER SMALL GTPASE SUPERFAMILY, P-LOOP CONTAINING NUCLEOSIDE TRIPHOSPHATE HYDROLASE-RELATED 1 216 - -
Ssu5g3490 217 Gene3D - 5 215 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g3490 Ssu-Chr5 85740931 85743783 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu5g3490 14 179 EF-hand Containing Proteins AT5G27540 28.649 9.30e-09 53.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g3490 K07976 - gmx:100781746 418.698
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu5g3490 5 85740931 85743783 Ssu5g3490 5 85740931 85743783 ECH