Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g3489 ATGGCGAATTGGATCTCCTCCAAACTTAAAGCTGCCGAGAACATTCTACACCAGATCGATCAGCAAGCGGCTGAATCGCTTCGCAAGAACGAGAGGCTTCGATCGGAGGAACCGAGCATTGATGCTCCCGCGAAATTAGGGAGTGGTGTGTCTCTGAAGGATCAATTGAAGAAGAAACCCTTGGAGAACAATGATTATCATGGAAAATTGCGCAGTGATCCCAATTTTAATGGGCTTAAAGCTACAGCAAGTGCACCCAAACTATCTCCCAAATCTGGCCCTACCCTCACAGATGATGATTGGACTGAACTCCTCAGTGCACCTACACCTACTCAGTCTATTGCTTCTGCTTCTGGGGGCAATCACAGTAATGGGTTACCTGCATCTCGTGGTTTGAGCAGAAATAGTGGTAGGAAACAGAAGGCTTTGTCTTCGGGGTTGTTGGTGTCGGATGTAAAGAGGAATTCAAAAAGTGGTAACAGTGGTCTGAGGTCCTTGAAGAAGCTGGACTCTGTCAAAGAAGTTAAATTGAGTGGAAAAGCCAGTGATGATGGGAAGGAATCTACCTCTTCAACTTCGACGGAGAGGAATTCGGCTGTAGAATCGGAGACTGATGGTAAATGGGGTAGAGGACTGGAGTATGCTGACAATGAGAGTTCTGAGAAGCTTGTGGTTGAGGAAAAgggaaatgaagaaaatgagcACCGCATTAATTATAGGGACATTTCTCCACCAGAATCGTTGCAGGAAGACGACAAAACTTTGGCTGCAGAAACATTGCCAGCACTGGGGGTAGATAAGGTGCAGGAAGCTAAGTTTGTGGCAGATGTTGATGGCAGTCAATTGAGAAGTACAATTAAAGGGAGGCATGAGCTTAATTCATCAATCTCCAGAAATTCAATATCTGATGATTTGAAAAGGGTTTCTCCTGTGGCTAGTGATGGAAGTTCTGATTCAGATATAGATTCCGGTTCAACATCTGATTCTGAAAGTGAACATGAGAGGGAGGAaaggagaaagaggagagaaaggaTTCTGGCTGAGAAAGCAGCAGCTAAAGCAATAAATACTATCAAGGAACGGGAGAATATGGTGGCCAAATTAGAGGGGGAGAAGGAAAGTCTAGAGAAAATACTTGAGGAGCGAGCTAAACAACAAGCACAAGAGGCTTCGCAGCTTCAGAGCACTATGATGGAAACAATGGAAGCTGTTGAGTTAGAAAAGCAGAAACATAATAATACTAGAATGAAATTTCTTGCACGTTTAGCTAAACTGGAGACTGCCAATACTGATCTTGCAAGATCCCTTGTGGCTGTGCAGTGGAACCTTGAAGTAGAGGTTAAACAAGTAGCAGAACTCAGACAGCAAATCACATCGAAAGAGTTGTTTCATGAAGAGCTCAGAAGGAGAATGAAGAATCCTAGTCAAACTGGAGCTTCACAAAATCAACTAGCCTCAAAAGGCTTTGAGTTTGAACGGGAAATTCTTGAGGCAGAGCActctttaattaatgataaagtTGCACAATTGCAGGAAAAGGCAAGGAAGCTGGAAGCTGACGTTGAAATGACAAGGAAAGAGATAGAAGAGCCAACAGAAGTTGAAGTTGAGCTCAAGCGAAGGCTTCAACAAATGACTGACCATTTAATACAGAAACAAGCAAAGGTTGAATCACTCTCTTCTGAGAAGGCAAGTCTTATATTCAGAATCGAGGCTGTGTCAAGGTTGCTGGATGAAAACATGTCAGCATCAGTTGCAACAAATATGAATCCTGCCTCCTCATCAAGTGACTTAGAATCAGGATTGTGGGAGTTCTCCAATTCAAAGTTGAAGCCTATGCTAAAAGCCAGAATTCATTCTGGCAAGAGACAACTTGGATCATTGCTTCAACAACTAGATTATATTTTTGTGACTGGTGCACTTTTTCTGAAAAGGAACTCAGCGGCAAAATTGTGGGCTTTGATATATCTTGTTTGCCTTCATTTCTGGGTGTTTTATATTCTTGTATCACATTCTAGCCCATCAAATGAGGGTAGATCTGGTGCCCAGATCTCATTGGAGAACATTAATAACACTGGAGGAGTATGA 2088 0.4176 MANWISSKLKAAENILHQIDQQAAESLRKNERLRSEEPSIDAPAKLGSGVSLKDQLKKKPLENNDYHGKLRSDPNFNGLKATASAPKLSPKSGPTLTDDDWTELLSAPTPTQSIASASGGNHSNGLPASRGLSRNSGRKQKALSSGLLVSDVKRNSKSGNSGLRSLKKLDSVKEVKLSGKASDDGKESTSSTSTERNSAVESETDGKWGRGLEYADNESSEKLVVEEKGNEENEHRINYRDISPPESLQEDDKTLAAETLPALGVDKVQEAKFVADVDGSQLRSTIKGRHELNSSISRNSISDDLKRVSPVASDGSSDSDIDSGSTSDSESEHEREERRKRRERILAEKAAAKAINTIKERENMVAKLEGEKESLEKILEERAKQQAQEASQLQSTMMETMEAVELEKQKHNNTRMKFLARLAKLETANTDLARSLVAVQWNLEVEVKQVAELRQQITSKELFHEELRRRMKNPSQTGASQNQLASKGFEFEREILEAEHSLINDKVAQLQEKARKLEADVEMTRKEIEEPTEVEVELKRRLQQMTDHLIQKQAKVESLSSEKASLIFRIEAVSRLLDENMSASVATNMNPASSSSDLESGLWEFSNSKLKPMLKARIHSGKRQLGSLLQQLDYIFVTGALFLKRNSAAKLWALIYLVCLHFWVFYILVSHSSPSNEGRSGAQISLENINNTGGV 695
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g3489 695 Coils Coil 351 396 - -
Ssu5g3489 695 Pfam Golgin subfamily A member 5 492 670 IPR019177 GO:0007030
Ssu5g3489 695 MobiDBLite consensus disorder prediction 184 199 - -
Ssu5g3489 695 MobiDBLite consensus disorder prediction 286 324 - -
Ssu5g3489 695 MobiDBLite consensus disorder prediction 167 183 - -
Ssu5g3489 695 MobiDBLite consensus disorder prediction 286 344 - -
Ssu5g3489 695 PANTHER GOLGIN SUBFAMILY A MEMBER 5 1 677 - -
Ssu5g3489 695 MobiDBLite consensus disorder prediction 102 165 - -
Ssu5g3489 695 PANTHER GOLGIN-84 1 677 IPR019177 GO:0007030
Ssu5g3489 695 Coils Coil 542 562 - -
Ssu5g3489 695 MobiDBLite consensus disorder prediction 27 255 - -
Ssu5g3489 695 MobiDBLite consensus disorder prediction 326 344 - -
Ssu5g3489 695 MobiDBLite consensus disorder prediction 55 69 - -
Ssu5g3489 695 Coils Coil 493 527 - -
Ssu5g3489 695 MobiDBLite consensus disorder prediction 200 253 - -
Ssu5g3489 695 Coils Coil 9 36 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g3489 - - gmx:100803473 1108.59
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu5g3489 5 85730532 85737863 Ssu5g3489 5 85730532 85737863 ECH