Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g3481 ATGTGCAACTCGCGTTGTGTGTGTACGAATAGGAGTAAGAGACGAAACAGAAGCAGAAGCAGAAGCAGCTACTTTCCATCCACCAGCACTAACAACTCCGTCAAAGTCAAAGACCCTGACATTTTGACATGGAACAAGGCCATTTCTACCCACATGCGCAATGGCCACTGCGATTCCGCACTCCGTGTCTTCAACTCCATGCCTCGCCGAAGCTCTGTCTCCTACAACGCCATGATATCTGGGTACTTGAGGAACGCCAAGAATTCCATCTCGTGGAATGGGCTGCTTGCGGCGTATGTTCATAATGGGAGACTTGAGGAGGCGCGTCGCTTGTTTGAGTCCCAGTCCGACTGGGAATTGATTTCTTGGAATTGTTTGATGGGTGGGTATATGAAGAGAAACATGTTGGGTGATGCTAGGCGGCTTTTTGACCAAATGCCTGTTAGGGATGTGATCTCCTGGAACACTATGATTTCTGGTTATGCCCAGGTCGGAGATTTGTCTCAAGCTAAGAGGTTGTTTGATGAATCTCCGATTCGGGATGTGTTCACATGGACAGCCATGGTGTCTGGATATGTGCAGAATGGAATGGTGGATGAAGCGAGAAAATTCTTTGATGAAATGCctgtaaaaaatgaaatttcttaCAATGCAATGCTTGCAGGCTATGTGCAATTCAAGAAAATGGACATTGCGAGGGAGTTGTTTGAGGCAATGCCTTGTTGGAATATAAGTTCATGGAATACCATGATTACTGGCTATGGTCAGAATGGTGGGATTGGGGAAAGGAGTGGGGCGTGTGGGTGGGTTGTTATGGGGTATACACTAGGGAAGTGTGAATTGGGAAGGTTTTGGCTGGAATTAGATTGGGCTTTGTGA 879 0.4619 MCNSRCVCTNRSKRRNRSRSRSSYFPSTSTNNSVKVKDPDILTWNKAISTHMRNGHCDSALRVFNSMPRRSSVSYNAMISGYLRNAKNSISWNGLLAAYVHNGRLEEARRLFESQSDWELISWNCLMGGYMKRNMLGDARRLFDQMPVRDVISWNTMISGYAQVGDLSQAKRLFDESPIRDVFTWTAMVSGYVQNGMVDEARKFFDEMPVKNEISYNAMLAGYVQFKKMDIARELFEAMPCWNISSWNTMITGYGQNGGIGERSGACGWVVMGYTLGKCELGRFWLELDWAL 292
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g3481 292 Pfam PPR repeat 245 258 IPR002885 -
Ssu5g3481 292 Pfam PPR repeat 73 85 IPR002885 -
Ssu5g3481 292 Pfam PPR repeat 43 70 IPR002885 -
Ssu5g3481 292 Pfam PPR repeat 152 176 IPR002885 -
Ssu5g3481 292 Pfam PPR repeat 214 242 IPR002885 -
Ssu5g3481 292 Pfam PPR repeat 121 149 IPR002885 -
Ssu5g3481 292 Pfam PPR repeat 90 113 IPR002885 -
Ssu5g3481 292 Pfam PPR repeat 183 211 IPR002885 -
Ssu5g3481 292 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 40 74 IPR002885 -
Ssu5g3481 292 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 88 122 IPR002885 -
Ssu5g3481 292 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 181 215 IPR002885 -
Ssu5g3481 292 PANTHER OS07G0578800 PROTEIN-RELATED 32 67 IPR045215 GO:0003723|GO:0009451
Ssu5g3481 292 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 150 180 IPR002885 -
Ssu5g3481 292 PANTHER PENTATRICOPEPTIDE (PPR) REPEAT PROTEIN 67 261 - -
Ssu5g3481 292 MobiDBLite consensus disorder prediction 13 33 - -
Ssu5g3481 292 Gene3D Tetratricopeptide repeat domain 32 87 IPR011990 GO:0005515
Ssu5g3481 292 Gene3D Tetratricopeptide repeat domain 178 268 IPR011990 GO:0005515
Ssu5g3481 292 Gene3D Tetratricopeptide repeat domain 88 177 IPR011990 GO:0005515
Ssu5g3481 292 PANTHER OS07G0578800 PROTEIN-RELATED 67 261 IPR045215 GO:0003723|GO:0009451
Ssu5g3481 292 PANTHER PENTATRICOPEPTIDE (PPR) REPEAT PROTEIN 32 67 - -
Ssu5g3481 292 TIGRFAM PPR: pentatricopeptide repeat domain 152 176 IPR002885 -
Ssu5g3481 292 TIGRFAM PPR: pentatricopeptide repeat domain 43 71 IPR002885 -
Ssu5g3481 292 TIGRFAM PPR: pentatricopeptide repeat domain 90 114 IPR002885 -
Ssu5g3481 292 TIGRFAM PPR: pentatricopeptide repeat domain 183 210 IPR002885 -
Ssu5g3481 292 TIGRFAM PPR: pentatricopeptide repeat domain 121 150 IPR002885 -
Ssu5g3481 292 TIGRFAM PPR: pentatricopeptide repeat domain 214 244 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g3481 Ssu-Chr5 85653806 85655872 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu5g3481 39 268 Glycosyltransferase AT1G05670 25.301 1.05e-17 81.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g3481 - - gmx:100804011 372.859
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu5g3481 5 85653806 85655872 Ssu5g3481 5 85653806 85655872 ECH