Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g3475 ATGAGCCACGAGCTGTTAGAGACGTACGCGTGCGTGCCCTCGATGGAGCGCGGTCGCGGGATTCTGATCTCCGGCGAGCCGAAGTCCAACTCCATCGTCTACACCAACGGCAGATCGGTGGTCATGATGAGCCTCCAAAACCCCCTCCACGTGTCCGTCTACGGGGACCACGCCTACCCCGCCACCGTCGCGCGCTTTTCCCCCAACGGCGAGTGGGTGGCCTCCGCCGACGCCTCCGGCACCGTCAGGATCTGGGGCGCGCGCAACGACTTCGTTTTGAAGAAGGAGTTCAGAGTCCTCTCCGCTCGCATCGACGACCTTCAGTGGTCCCCGGACGGCCTCAGAATCGTTGCCTGCGGCGAAGGCAAAGGGAAGTCCTTCGTCCGCGCTTTTATGTGGGATTCGGGGACTAATGTTGGTGAATTTGATGGTCACTCGAGGCGGGTTTTGAGTTGCGCATATAAACCCACCAGGCCTTTTCGCGTTGTCACCTGTGGAGAGGATTTTCTGCTCAACTTTTATGAGGGACCTCCCTTTAGATTTAAGCTATCTCACAGGGATCattcaaattttgtcaattgTGTAAGATATTCTCCAGATGGCAGTAAATTTATAAGTGTAAGTTCTGACAAAAAGGGTATCATATTCGATGGAAAGAGTGCAGAAAAGATTGGTGAGTTGTCTTCTGAAGGTGGGCATACTGGTAGTATTTATGCTGTTAGCTGGAGCCCTGATGGAAAGCAGGTGCTGACTGTATCTGCTGACAAGTCTGCAAAAGTATGGGACATATCTGAGGACAATAATGGAAAGGTGAAGAAAACATTGACTTGTCCTGGCTCTGGTGGAGTTGAAGACATGCTAGTGGGGTGCCTATGGTTGAATGATTATCTTGTCACTGTTTCTCTTGGTGGGACAATCTCTATATTTTTAGCAAGTGATCTTGATAAGGCCCCGACAGCATTTTCTGGACATATGAAAAATGTTTCGTCCTTAACTATTCTTAGAAGTAACCCTAGAGTGCTCTTGTCTAGCAGTTACGATGGCTTAATAGTTAAGTGGATTCAAGGGATTGGATATAGTGGAAAACTACAAAGGAGGGAAAGTACTCAAATCAAATGCTTAGCAGCTGTAGAAGAAGAGATTGTTACATCTGGATTCGATAATAAGATACAGCGAGTTTCTTTACATGGGGATCAGTGTGGAGATGCTGAAGCCATTGATATAGGAAGTCAACCAAAGGACTTGAGTGTTGCACTTCTTTCTCCTGAACTTGCTCTAGTTTCAATTGATTCAGGAGTTGTCATGCTGCGTGGTACCAAAATTGTGTCAACCATTAATCTTGGGTTTATTGTGTCAGCATCTGCTGTCTCACCTGATGGAAGTGAAGCCATTATCGGTGGACAGGATGgtaaattgcacatatattctATTTCTGGTGATACTCTTGTAGAAGAGGCGGTCCTTGAGAAACATAGGGGTGCTATTAGTGTCATACGTTATTCTCCAGACGTTTCAATGTTTGCATCAGGGGATGTCAATCGAGAAGCTGTAGTATGGGACCACACCTCCCGAGAGGTGAAGCTTAAGAACATGTTGTACCATACTGCTAGGATAAACTGCCTTGCGTGGTCCCCTGATAGCCGTAGGATTGCTACAGGATCACTTGACACATGTGTCATCATATATGAAGTTGATCAGCCTGCATCTAGTAGAATTACCATAAAGGGTGCTCATTTAGGCGGGGTTTATGGATTAGCATTCACTGATGAGTATAGTTTGGTTAGCTCAGGTGAGGATGCTTTTATCCGTGTTTGGAGGATAACCCCTCAGTGA 1833 0.4637 MSHELLETYACVPSMERGRGILISGEPKSNSIVYTNGRSVVMMSLQNPLHVSVYGDHAYPATVARFSPNGEWVASADASGTVRIWGARNDFVLKKEFRVLSARIDDLQWSPDGLRIVACGEGKGKSFVRAFMWDSGTNVGEFDGHSRRVLSCAYKPTRPFRVVTCGEDFLLNFYEGPPFRFKLSHRDHSNFVNCVRYSPDGSKFISVSSDKKGIIFDGKSAEKIGELSSEGGHTGSIYAVSWSPDGKQVLTVSADKSAKVWDISEDNNGKVKKTLTCPGSGGVEDMLVGCLWLNDYLVTVSLGGTISIFLASDLDKAPTAFSGHMKNVSSLTILRSNPRVLLSSSYDGLIVKWIQGIGYSGKLQRRESTQIKCLAAVEEEIVTSGFDNKIQRVSLHGDQCGDAEAIDIGSQPKDLSVALLSPELALVSIDSGVVMLRGTKIVSTINLGFIVSASAVSPDGSEAIIGGQDGKLHIYSISGDTLVEEAVLEKHRGAISVIRYSPDVSMFASGDVNREAVVWDHTSREVKLKNMLYHTARINCLAWSPDSRRIATGSLDTCVIIYEVDQPASSRITIKGAHLGGVYGLAFTDEYSLVSSGEDAFIRVWRITPQ 610
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g3475 610 Pfam WD domain, G-beta repeat 534 562 IPR001680 GO:0005515
Ssu5g3475 610 Pfam WD domain, G-beta repeat 576 605 IPR001680 GO:0005515
Ssu5g3475 610 Pfam WD domain, G-beta repeat 186 212 IPR001680 GO:0005515
Ssu5g3475 610 Pfam WD domain, G-beta repeat 63 85 IPR001680 GO:0005515
Ssu5g3475 610 Pfam WD domain, G-beta repeat 231 262 IPR001680 GO:0005515
Ssu5g3475 610 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 230 264 - -
Ssu5g3475 610 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 531 565 - -
Ssu5g3475 610 ProSiteProfiles Trp-Asp (WD) repeats profile. 488 529 IPR001680 GO:0005515
Ssu5g3475 610 Gene3D - 12 338 IPR015943 GO:0005515
Ssu5g3475 610 SMART WD40_4 220 262 IPR001680 GO:0005515
Ssu5g3475 610 SMART WD40_4 47 86 IPR001680 GO:0005515
Ssu5g3475 610 SMART WD40_4 314 354 IPR001680 GO:0005515
Ssu5g3475 610 SMART WD40_4 135 175 IPR001680 GO:0005515
Ssu5g3475 610 SMART WD40_4 567 606 IPR001680 GO:0005515
Ssu5g3475 610 SMART WD40_4 178 217 IPR001680 GO:0005515
Ssu5g3475 610 SMART WD40_4 268 310 IPR001680 GO:0005515
Ssu5g3475 610 SMART WD40_4 90 134 IPR001680 GO:0005515
Ssu5g3475 610 SMART WD40_4 438 476 IPR001680 GO:0005515
Ssu5g3475 610 SMART WD40_4 481 520 IPR001680 GO:0005515
Ssu5g3475 610 SMART WD40_4 525 563 IPR001680 GO:0005515
Ssu5g3475 610 ProSiteProfiles Trp-Asp (WD) repeats profile. 230 271 IPR001680 GO:0005515
Ssu5g3475 610 Gene3D - 8 607 IPR015943 GO:0005515
Ssu5g3475 610 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 488 520 - -
Ssu5g3475 610 ProSitePatterns Trp-Asp (WD) repeats signature. 249 263 IPR019775 -
Ssu5g3475 610 ProSiteProfiles Trp-Asp (WD) repeats profile. 575 610 IPR001680 GO:0005515
Ssu5g3475 610 PANTHER ACTIN-INTERACTING PROTEIN 1-1 4 610 - -
Ssu5g3475 610 ProSiteProfiles Trp-Asp (WD) repeats profile. 531 572 IPR001680 GO:0005515
Ssu5g3475 610 CDD WD40 57 350 - -
Ssu5g3475 610 ProSiteProfiles Trp-Asp (WD) repeats profile. 185 226 IPR001680 GO:0005515
Ssu5g3475 610 ProSiteProfiles Trp-Asp (WD) repeats profile. 54 95 IPR001680 GO:0005515
Ssu5g3475 610 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 575 610 - -
Ssu5g3475 610 PANTHER WD-REPEATCONTAINING PROTEIN WDR1 4 610 - -
Ssu5g3475 610 SUPERFAMILY YVTN repeat-like/Quinoprotein amine dehydrogenase 231 396 IPR011044 -
Ssu5g3475 610 SUPERFAMILY Quinoprotein alcohol dehydrogenase-like 48 568 IPR011047 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g3475 Ssu-Chr5 85584002 85588635 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu5g3475 66 205 Miscellaneous Gene Families AT5G08390 25.000 1.25e-06 49.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g3475 K24736 - gmx:100794702 1174.84
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu5g3475 5 85584002 85588635 Ssu5g3475 5 85584002 85588635 ECH