Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g3463 ATGGATAGAGAAGATCAAAAGGAATCTCTACGGTCTCCATTGGTACACATCACAGTGGAGGATAGACTCAAAGTCGATAATATACAGCGAAACAAGGAGAAGGCaatagagagagaggaagtCTATGAAGAAGTGAGGAAGCAGTTATGGCTAGCAGGGCCTTTAATATCTGTTTCTGTATTAAATTATTCCCTACAAATTATATCTGTAATGTTTGTGGGGCATCTCGGGGAATTGCCTCTCTCTGGTGCTTCAATGGCTACTTCTTTTGCCTCTGTCACTGGTTTTAGCTTATTGGTGGGAATGGCTAGTGCTTTGGATACCTTGTGTGGCCAATCATATGGAGCAAAGCAGCACCATATGTTAGGCATACACATGCAGAGGGCCATGCTTGTTCTTATGATTGTTAGCATACACCTTGCATTTATTTGGGCAAACACAGGATCCATTCTAATTGCCCTTGGCCAAGATCCTGAAATATCTGCAGAAGCTGGACAATACGCTCGGCTAATGATTCCAAGCCTTTTTGCCTATGGCATTCTTCAGTGCCTGAACAGATTTTTGCAAACCCAAAATATTGTGTTTCCAATGATGTTCAGCTCCGGAGTCACTACTTTACTGCATATTCTCATATGCTGGACTATGGTATTTAAATCTGGACTTGGCAACAGCGGAGCTGCCATAGCAAATGCTATATCTTACTGGATAAATGTCTTGATTCTGATACTCTACGTCAAGTTTTCTCCCTCATGTTCAAAAACATGGACTGGATTTTCTAAAGAGGCATTGCATGGCATTCCTTCTTTTCTTAGACTTGCAATTCCTTCTGCTGTTATGGTTTGCTTGGAAATGTGGTCATTTGAAATGATGGTTCTCCTCTCTGGCCTTCTTCCAAATCCAAAATTAGAAACATCAGTGCTTTCTATCTGTCTGAATACTTCGACAACTGTTTGGATGATCCCTTTTGGACTCAGTGGAGCTGTAAGCACTCGTGTTTCAAATGAACTAGGAGCTGGTCATCCACGGACTGCACGTTTAGCTGtgtattttgtctttataatgGCCATTATTGAGGGAACCTTTGTTGGAGCAGTGGTGATACTAATACGCAATATTTGGGGCTATGCATATAGTAATGAAGTAGAAGTGGTCCAATATGTAGCTATCATGTTGCCAATTCTTGCGACATCCATTTTCCTGGATGCACTCCAGTGTGTTCTTTCAGGCACGGCTAGAGGATGTGGTTGGCAAAAAATAGGTGCTTTCATTAATCTAGGATCATACTATTTAGTTGGGATTCCATCAGCTATCTTATTTGCTTTTGTCATGCACATTGGTGGGAAGGGGCTTTGGCTGGGGATCATATGTGCACTAGTTGTTCAAGTGTCATGCCTTATGATCATTACAATACGTACTGATTGGGAGCAAGAGGCAAAAAAGGCTAAAGACAGAGTCTACGATTCAATGAGAGCTGAGGTCATAGTCTCATGA 1491 0.4091 MDREDQKESLRSPLVHITVEDRLKVDNIQRNKEKAIEREEVYEEVRKQLWLAGPLISVSVLNYSLQIISVMFVGHLGELPLSGASMATSFASVTGFSLLVGMASALDTLCGQSYGAKQHHMLGIHMQRAMLVLMIVSIHLAFIWANTGSILIALGQDPEISAEAGQYARLMIPSLFAYGILQCLNRFLQTQNIVFPMMFSSGVTTLLHILICWTMVFKSGLGNSGAAIANAISYWINVLILILYVKFSPSCSKTWTGFSKEALHGIPSFLRLAIPSAVMVCLEMWSFEMMVLLSGLLPNPKLETSVLSICLNTSTTVWMIPFGLSGAVSTRVSNELGAGHPRTARLAVYFVFIMAIIEGTFVGAVVILIRNIWGYAYSNEVEVVQYVAIMLPILATSIFLDALQCVLSGTARGCGWQKIGAFINLGSYYLVGIPSAILFAFVMHIGGKGLWLGIICALVVQVSCLMIITIRTDWEQEAKKAKDRVYDSMRAEVIVS 496
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g3463 496 Coils Coil 25 45 - -
Ssu5g3463 496 CDD MATE_eukaryotic 47 480 IPR045069 GO:0042910|GO:1990961
Ssu5g3463 496 Pfam MatE 275 437 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Ssu5g3463 496 Pfam MatE 54 214 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Ssu5g3463 496 PANTHER PROTEIN DETOXIFICATION 25 484 - -
Ssu5g3463 496 TIGRFAM matE: MATE efflux family protein 54 451 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Ssu5g3463 496 PANTHER MULTIDRUG RESISTANCE PROTEIN 25 484 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g3463 Ssu-Chr5 85433884 85436459 Proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g3463 K03327 - gmx:100792588 926.776
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu5g3463 5 85433884 85436459 Ssu5g3463 5 85433884 85436459 ECH