Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g3460 atgatttacgACACAATACTAGCCAAAAGCTTTAGTCGTTATGAGCAGAGAAGGTTGGGATATGGAGCATTTGTGAGCTGCTTGCTGACAGTTTTGAGTCTTTGCACTGTGTTTAAGCCTTACTTGGGTCCTGTGCATGTTTTGAACCTGAAGCTCTCCATCGGTGTTGACACCAAAATGCATATGTTCAATGACACCAGCAGCTCTTCACAAATAGCCAAAGGTGACGGAaaggaaacaaagaaagagGAGCTACTATGCACTTCAGAAGAAAGAACAGAATTTTGCCAAGCATGGGGAGATATCAGAGTCTATGGAAAATCCTCCACTGTTTACTTTGTTCCATCCAAGACAACTATGTTGGAAAAAAACATGTCATGGAGTTTAAAGCCTTATGCACGGAGGGACGATGTAGATGCGATGATTCGTGTAAGAGAATGGTCATTGAAGGCAGTAAATGTTAGCCAGGAAGTCCCCCAATGCACCCAAAAACACAGCATTCCAGCAGTAATATTTTCTACTGGCGGGTATGTTGGTAATCACTTCCATGAATTCACTGACATTGTCATTCCACTGTTTTTGACTTCCAGACAATTCAATGGAGAAGTACAATTTATCATAACTGATAAGCGTCCTTGGTGGATTTCAAAGCACAAGCCACTTCTTAAGAAGCTGTCCAACTATGAGATTATGGACATTGATAGAGATGATGAAGTTCATTGCTTCCCAAGGGTGAATGTGGGTCTTAAACGGCAACATGAAGAGCTAAGCATTGACCCTCAAAAGTACTCCTATTCTATGAAGGACTTCAGGGATTTTTTGAGAAGTTCCTATGCATTGAAGACGGTTGAAGCAATCAAAATCAGAGATGGTCAACTTGGAAAGCCAAGGCTCATGATtctttcaagaaaaagatcaagATCCTTCACTAATACAGATGAAATAGCAAAAATGGCCGAGAGTTTGGGTTTCGACGTCATTATTAAGGAAGCAGGAGGGAGCATGTGGAACTTTGCAAATGTTGTGAATTCTTGTGATGTGTTACTGGGAGTTCATGGTGCTGGTCTCACTAACATACTCTTCCTTCCGGAAAATGCAGTTTTCATCCAAGTTGTGCCATATGGTGGGTTTGCATTGGACTGGCTTGCCACAAATGACTTTGGAAGTCCCTCAAAGTATATGAACATAAAGTACTTGGAATACAAAATAAGCTTGGAAGAAAGCACTCTTATACAACAATACCCGCTTGATCACATGTTTATAAAGGATCCCCCATTAGTTGAGAAAATAGGATGGGATGCATTTAAGTCTGTGTATTTGGACAAACAAAATGTACAGCTTGATGTTAATAGGTTTAGGCCTACATTGCAGAAAGCCCTTGAGCTATTGTATCAATAA 1398 0.3941 MIYDTILAKSFSRYEQRRLGYGAFVSCLLTVLSLCTVFKPYLGPVHVLNLKLSIGVDTKMHMFNDTSSSSQIAKGDGKETKKEELLCTSEERTEFCQAWGDIRVYGKSSTVYFVPSKTTMLEKNMSWSLKPYARRDDVDAMIRVREWSLKAVNVSQEVPQCTQKHSIPAVIFSTGGYVGNHFHEFTDIVIPLFLTSRQFNGEVQFIITDKRPWWISKHKPLLKKLSNYEIMDIDRDDEVHCFPRVNVGLKRQHEELSIDPQKYSYSMKDFRDFLRSSYALKTVEAIKIRDGQLGKPRLMILSRKRSRSFTNTDEIAKMAESLGFDVIIKEAGGSMWNFANVVNSCDVLLGVHGAGLTNILFLPENAVFIQVVPYGGFALDWLATNDFGSPSKYMNIKYLEYKISLEESTLIQQYPLDHMFIKDPPLVEKIGWDAFKSVYLDKQNVQLDVNRFRPTLQKALELLYQ 465
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g3460 465 PANTHER GLYCOSYLTRANSFERASE 2 76 IPR007657 GO:0016757
Ssu5g3460 465 Pfam Glycosyltransferase 61 265 368 IPR007657 GO:0016757
Ssu5g3460 465 PANTHER GLYCOSYLTRANSFERASE 80 464 IPR007657 GO:0016757
Ssu5g3460 465 PANTHER FAMILY 61 PROTEIN, PUTATIVE-RELATED 80 464 - -
Ssu5g3460 465 PANTHER FAMILY 61 PROTEIN, PUTATIVE-RELATED 2 76 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g3460 Ssu-Chr5 85388865 85390763 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g3460 - - gmx:100805608 825.083
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu5g3460 5 85388865 85390763 Ssu5g3460 5 85388865 85390763 ECH