Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g3459 ATGCCTACGGCATACTCAGGCATATTTCAGGGCTTCATCAGATTCAGAGCCATGTCGCCGCTTCGGTGCACTCCTCTCAGACCTTATCTCCCCTTCATTTCCACCACTCCTCTTCACCTCACCGCTATTCGCCTTCGCTCCTGCTCCTCCGCGCTTCACCTCGTCAGCGACACGCGCCAGAGGACCGTCACGTTGTCGTTTTGGCACCAGCGCAGCTCCAGTTACGGTCGTTTCGCCTACCAGGACGTGTCCAGTGACGATTCCGATGTCGAATTCGCGTCTTCCACCTCTCACAACCAACAAGTGGGTGATTCAACCCTCGAAAATATTGACGAGTGGAGATGGAAGCTAACCATGCTTCTGCGCAACAAAGACGAACAAGAAGTGGTGTCCAGGGAGAAGAAGGACCGTCGCGATTTCGAGCAACTTTCGACTTTAGCTACCAGGATGGGTTTGTATAGCCGGCAATATGCAAGAGTTGTTGTGTTTAGCAAGGCTCCTTTGCCGAATTACCGCCCTGACCTGGATGATAAGCGTCCACAAAGAGAGGTAGTCTTGCCATTAGGTGTACATAAAGAAGTAGATGCTCATCTCCTTGCCCATCTTTCACAAAAGGCTACAAAGAGGTTGGGTTCTTTGGATGATTCCTTGTATAGATCAAGTGATGCTAGAAGCACTCCAACTGACGAAGGAATGTATGAGCCGCCAGAGCCCATGACCCATAATAGTGTTGTCAAGGAGAAAATCCTTCAACGAAGAAGTTTGCAACTGCATCATCGGCAACAGGATTGGCAGGAGTCTCCTGAAGGGCAAAAGATGCTTGAATTTCGTAGAAGTCTTCCTGCATTCAAAGAGAAGGATGCATTTTTGAGAGTTCTTTCAGAGAATCAGGTCGTTGTTGTCTCAGGTGAAACTGGTTGTGGTAAGACCACACAACTTCCTCAATACATATTAGAATCTGAGATTGAAGCTGCACGTGGAGCCGTATGTAACATAATTTGTACTCAGCCTAGAAGAATATCTGCTATGTCTGTTTCTGAAAGAGTTGCAGCAGAACGTGGGGAGAAATTGGGAGAATCTGTTGGATACAAAGTTCGCCTGGAGGGTTTGAAAGGGAGAGATACTCGTCTTCTTTTTTGCACCACAGGTGTATTATTGCGGAGACTGCTTGTGGATAGGAATTTAAACGGTGTAACTCATGTTATTGTTGATGAAATTCATGAACGTGGAATGAATGAAGATTTTCTTCTCATTGTCCTGAAGGAACTTCTCCCTTGTCGTCCTGATTTGAGGTTGATTTTGATGAGTGCAACCTTAAATGCTGAGCTTTTTTCCTTGTACTTTAATGGTGCTCCAACTATGCATATTCCTGGTTTTACATTTCCAGTTCGAGCCCATTTTCTTGAGGATATTCTGGAAAGGACTGGATATCGGTTGACACCTTATAATCAAATTGATGACTATGGTCAAGAAAAAACATGGAAAATGCAGAAACAAACTCAGgctttcagaaaaaaaaagagccaGATTGCTTCTGCTGTTGAGGATGCCTTAGAAGTTGCAGACTTTAAGGGGTGTAGCCTACGCACTCGAGATTCATTGTCCTGCTGGTGCCCTGACTCAATTGGTTTTAACCTTATTGAAAATGTGCTTTGCCACATTGTTAAGAATGGAAGGCCAGGTGCTGTTTTGGTTTTTATGACTGGTTGGGATGATATAAATTCTTTGAAGGATCAACTCCAAGCTCATCCTTTGTTGGGTGATCAGAGCCGAGTATTGCTTCTTGCATGCCACGGCTCTATGGCCAGCTCTGAGCAGAGGTTGATATTTGAAAATCCTGGAGGAGGGGTGAGGAAAATTGTTCTGGCAACTAACATGGCTGAGACTAGTATTACCATCAATGATGTTGTCTTTGTGGTCGACTCtggaaaagcaaaagaaacatCATATGACGCATTAAATAACACTCCTTGTTTGCTTCCATCTTGGATCTCAAAGGCTGCTGCCCGGCAGaGAAGAGGAAGGGCTGGTCGTGTTCAGCCTGGTGAATGCTACCATCTTTATCCCAGATGTGTTTATGATGCTTTTGCTGATTATCAATTGCCAGAGCTTTTGAGAACACCTTTGCAGTCCTTATGTCTGCAAATCAAAACTCTACAACTTGGAAGCATCTCTGAGTTTTTATCTAGAGCTCTACAGCCACCAGAGCCTCTATCGGTTCAAAATGCTATAGAATATTTGAAGACTATCGGGGCCTTAGatgagaatgaaaatttaacaGTTTTAGGGCACAAATTGGCAATGATTCCTGTAGAGCCCAAACTTGGAAAGATGCTCATTTTGGGAACTATCTTCAAGTGTTTGGATCCTATAATGACTGTTGTTGCTGGTCTTAGTGTAAGAGATCCATTTGTGATGCCATCTGACAAGAAGGATCTTGCAGAGTCTGCCAAAGCCCAATTTGCTGCTCGCGACTATAGTGATCATCTTGCACTCATCCGGGCTTATGAGGGTTGGAAAGATGCTGAAGCACAGCAAGCTGGTTACGAGTACTGTTGGcgaaattttctttcttctcaaaCACTTAGGGCCATTGACTCTCTTCGAAAGCAATTCTTTTACTTGCTCAAAGATATTGGTCTGATCAATAACAATTCTGAAACCTACAATACATGGAGTCATGAAGAGCATTTACTCCGAGCAGTAATCTGTGCGGGTTTGTTTCCTGGAATATCCTCTGTTGTGAACAAAGATAAGTCAATAGCACTGAAAACAATGGAGGATGGTCAGGTTCTTCTGCATGCTAGCTCTGTAAATGGTGGTGTATCCCGAATTCCATACCCATGGttaatgtttaatgaaaaggtGAAAGTGAATTCAGTATTCCTTAGGGATTCAACTGGTATATCTGACTCAGTGCTTCTCTTATTTGGTGGGAATGTATCCAGAGGTGGACTAGATGGTCACCTGAAAATGTTGGGAGGGTATTTGGAGTTTTTCATGAAACCAGACCTAGCCAAGACTTACTTAAGCTTAAAGATGGAAATGGAAGAACTGATACAGAAAAAACTTCTGGATCCCATGTTGGAAACACAATCGCATAGGGAGCTTCTTTCAGCTGTTAGATTGTTGGTGTCAGAGGACAATTGTGATGGTAGATTTGTCTTTGGTCGCCAGGCCCTACCACAATTAAAGAAGGAAACAAACTCCAAAAGTGGTGGTGGAGTTGGGGGTGATAATTCTAAAAATCAGCTTCAAACATTCCTTAACAGGGCTGGACATGAATCACCAACTTACAAAACAAATCAGCTGAAAAACAACCAATTCCGTTCTACTGTTATATTCAACGGGTTGAATTTTGTTGGTCAGCCATGCAGCAGCAAAAAATTAGCAGAAAAATCTGCTGCTGCTGAGGCTCTGCTATGGTTAAAAGGGGATAGCCATTCATCTCATGATATTGACCATGCATCAGTCCTTTTGAAAAAGAGCAACAAGAGAAGTAGGAAAAATTCATTTAGTGGTGCTAAATGGAGTTGA 3537 0.4252 MPTAYSGIFQGFIRFRAMSPLRCTPLRPYLPFISTTPLHLTAIRLRSCSSALHLVSDTRQRTVTLSFWHQRSSSYGRFAYQDVSSDDSDVEFASSTSHNQQVGDSTLENIDEWRWKLTMLLRNKDEQEVVSREKKDRRDFEQLSTLATRMGLYSRQYARVVVFSKAPLPNYRPDLDDKRPQREVVLPLGVHKEVDAHLLAHLSQKATKRLGSLDDSLYRSSDARSTPTDEGMYEPPEPMTHNSVVKEKILQRRSLQLHHRQQDWQESPEGQKMLEFRRSLPAFKEKDAFLRVLSENQVVVVSGETGCGKTTQLPQYILESEIEAARGAVCNIICTQPRRISAMSVSERVAAERGEKLGESVGYKVRLEGLKGRDTRLLFCTTGVLLRRLLVDRNLNGVTHVIVDEIHERGMNEDFLLIVLKELLPCRPDLRLILMSATLNAELFSLYFNGAPTMHIPGFTFPVRAHFLEDILERTGYRLTPYNQIDDYGQEKTWKMQKQTQAFRKKKSQIASAVEDALEVADFKGCSLRTRDSLSCWCPDSIGFNLIENVLCHIVKNGRPGAVLVFMTGWDDINSLKDQLQAHPLLGDQSRVLLLACHGSMASSEQRLIFENPGGGVRKIVLATNMAETSITINDVVFVVDSGKAKETSYDALNNTPCLLPSWISKAAARQRRGRAGRVQPGECYHLYPRCVYDAFADYQLPELLRTPLQSLCLQIKTLQLGSISEFLSRALQPPEPLSVQNAIEYLKTIGALDENENLTVLGHKLAMIPVEPKLGKMLILGTIFKCLDPIMTVVAGLSVRDPFVMPSDKKDLAESAKAQFAARDYSDHLALIRAYEGWKDAEAQQAGYEYCWRNFLSSQTLRAIDSLRKQFFYLLKDIGLINNNSETYNTWSHEEHLLRAVICAGLFPGISSVVNKDKSIALKTMEDGQVLLHASSVNGGVSRIPYPWLMFNEKVKVNSVFLRDSTGISDSVLLLFGGNVSRGGLDGHLKMLGGYLEFFMKPDLAKTYLSLKMEMEELIQKKLLDPMLETQSHRELLSAVRLLVSEDNCDGRFVFGRQALPQLKKETNSKSGGGVGGDNSKNQLQTFLNRAGHESPTYKTNQLKNNQFRSTVIFNGLNFVGQPCSSKKLAEKSAAAEALLWLKGDSHSSHDIDHASVLLKKSNKRSRKNSFSGAKWS 1178
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g3459 1178 MobiDBLite consensus disorder prediction 217 243 - -
Ssu5g3459 1178 Gene3D - 1066 1148 - -
Ssu5g3459 1178 CDD SF2_C_RHA 537 688 - -
Ssu5g3459 1178 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 283 908 IPR027417 -
Ssu5g3459 1178 SMART ultradead3 278 471 IPR014001 -
Ssu5g3459 1178 PANTHER ATP-DEPENDENT RNA HELICASE 66 1077 - -
Ssu5g3459 1178 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 290 457 IPR014001 -
Ssu5g3459 1178 Pfam Helicase associated domain (HA2) 743 829 IPR007502 GO:0004386
Ssu5g3459 1178 Pfam Helicase conserved C-terminal domain 551 679 IPR001650 -
Ssu5g3459 1178 Pfam Double-stranded RNA binding motif 1081 1143 IPR014720 -
Ssu5g3459 1178 Gene3D - 237 458 IPR027417 -
Ssu5g3459 1178 SUPERFAMILY dsRNA-binding domain-like 1078 1149 - -
Ssu5g3459 1178 CDD DEXHc_RHA-like 296 456 - -
Ssu5g3459 1178 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 546 720 IPR001650 -
Ssu5g3459 1178 PANTHER DEXH-BOX ATP-DEPENDENT RNA HELICASE DEXH5, MITOCHONDRIAL 66 1077 - -
Ssu5g3459 1178 SMART ha2_5 742 833 IPR007502 GO:0004386
Ssu5g3459 1178 Pfam Oligonucleotide/oligosaccharide-binding (OB)-fold 899 981 IPR011709 -
Ssu5g3459 1178 ProSiteProfiles Double stranded RNA-binding domain (dsRBD) profile. 1080 1145 IPR014720 -
Ssu5g3459 1178 Gene3D - 544 698 IPR027417 -
Ssu5g3459 1178 Gene3D - 722 824 - -
Ssu5g3459 1178 Pfam DEAD/DEAH box helicase 292 441 IPR011545 GO:0003676|GO:0005524
Ssu5g3459 1178 SMART helicmild6 574 680 IPR001650 -
Ssu5g3459 1178 SMART DRBM_3 1081 1144 IPR014720 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g3459 Ssu-Chr5 85333310 85387427 Dispersed/Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g3459 K14442 - gmx:100791006 2095.09
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu5g3459 5 85333310 85387427 Ssu5g3459 5 85333310 85387427 ECH