LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Ssu5g3458	ATGGCGGCAATCGCGGCTCCCCAACACCGATCCTCGAAGACAGAATCCTACGTGGACAACAAGCGCAAGGAGGACGTCCGCCACGCGAACATCGTGGCCGCACGCGCCGTTGCGAACGCGGTGCGGACGAGCCTCGGCCCCAAGGGCATGGACAAGATGATCTCCACCTCCTCCGACGAGGTGATCATCACCAACGACGGCGCCACCATACTGAACAAGATGAAGGTCCTCCAACCCGCGGCGAAGATGCTGGTGGAGCTGTCGAAGTCGCAGGACTCCGCCGCCGGCGACGGCACCACCACGGTGGTGGTCATCGCCGGCGCGCTGCTTGAGCAGTGCCTCCTCCTCCTCTCCCACGGCATCCACCCCACCGTGGTCTCCGACTCTCTCCACAAGGCCGCCGTGAAGGCCGTCGACGTGCTCACCGCCATGGCCGTCCCGGTGGAGCTCTCCGACCGTGACTCCCTCGTGAAGTCCGCCAGCACCTCCCTCAACAGCAAGGTCGTCAGCCAGTACTCCACGCTGCTCGCGCCGCTCGCCGTTGACGCCGTACTCTCCGTCGTCGACGCCGCCAAGCCCGACATGGTCGACCTCCGCGACGTCAAGATCGTGAAGAAGCTCGGTGGCACCGTCGACGACACCGAACTCGTCAGGGGCCTCGTCTTCGACAAGAAGGTCAGCCACGCGGCCGGCGGACCCACCCGCATGGAGAACGCCAAGATCGCCGTCATTCAGTTCCAGATTTCGCCGCCGAAGACCGACATCGAGCAGAGCATCGTGGTGAGTGATTACTCTCAGATGGATAGGATTTTGAAGGAAGAGAGGAGCTATATTCTTGGCATGATTAAGAAGATTAAGGCCGCGGGTTGTAATGTGTTGTTGATTCAGAAGAGTATTTTGAGGGATGCTGTTACTGATTTGTCCTTGCATTACCTTGCAAAAGCTAAGATTTTGGTTATCAAGGATGTGGAGAGGGATGAGATTGAGTTTATAACCAAGACCTTGAATTGTTTGCCCATTGCTAACATTGAGCATTTTCGCGCGGAGAAGTTGGGTTATGCTGATCTTGTGGAAGAGGTTTCCCTTGGGGATGGGAAGATTGTGAAGATTACTGGGATCAAGGACATGGGGAAGACTACGACTGTGCTTGTTCGTGGGTCTAATCAGCTTGTGATTGATGAGGCCGAGCGGAGTTTGCACGATGCTTTGTGTGTTGTTAGGTGTTTGGTTGCCAAGAGGTTTCTCATTGCTGGCGGTGGCGCACCGGAGATTGAACTCTCCAGGCAGCTGGGTGCCTGGGCTAAGGTGTTGCATGGAATGGAGGGTTATTGTGTGAAGGCGTTTGCTGAGGCACTTGAAGTTATTCCTTATACTTTGGCGGAGAATGCTGGTTTGAACCCGATTGCCATTGTTACTGAGCTGAGGAATCGTCATGCGCAGGGCGAGATTAATACTGGAATCAATGTGAGGAAGGGTCAGATTACCAACATCTTGGAGGAGAATGTGGTGCAGCCACTGCTGGTGAGCACGAGTGCGATCACCTTGGCCACAGAGTGTGTGCGGATGATTTTGAAGATTGATGATATTGTAACTGTGAGGTAG	1602	0.5556	MAAIAAPQHRSSKTESYVDNKRKEDVRHANIVAARAVANAVRTSLGPKGMDKMISTSSDEVIITNDGATILNKMKVLQPAAKMLVELSKSQDSAAGDGTTTVVVIAGALLEQCLLLLSHGIHPTVVSDSLHKAAVKAVDVLTAMAVPVELSDRDSLVKSASTSLNSKVVSQYSTLLAPLAVDAVLSVVDAAKPDMVDLRDVKIVKKLGGTVDDTELVRGLVFDKKVSHAAGGPTRMENAKIAVIQFQISPPKTDIEQSIVVSDYSQMDRILKEERSYILGMIKKIKAAGCNVLLIQKSILRDAVTDLSLHYLAKAKILVIKDVERDEIEFITKTLNCLPIANIEHFRAEKLGYADLVEEVSLGDGKIVKITGIKDMGKTTTVLVRGSNQLVIDEAERSLHDALCVVRCLVAKRFLIAGGGAPEIELSRQLGAWAKVLHGMEGYCVKAFAEALEVIPYTLAENAGLNPIAIVTELRNRHAQGEINTGINVRKGQITNILEENVVQPLLVSTSAITLATECVRMILKIDDIVTVR	533

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Ssu5g3458	533	SUPERFAMILY	GroEL equatorial domain-like	20	531	IPR027413	-
	Ssu5g3458	533	PANTHER	T-COMPLEX PROTEIN 1 SUBUNIT DELTA	13	531	-	-
	Ssu5g3458	533	SUPERFAMILY	GroEL-intermediate domain like	150	411	IPR027410	-
	Ssu5g3458	533	Gene3D	-	147	413	IPR027410	-
	Ssu5g3458	533	Pfam	TCP-1/cpn60 chaperonin family	37	531	IPR002423	GO:0005524
	Ssu5g3458	533	ProSitePatterns	Chaperonins TCP-1 signature 1.	42	54	IPR002194	GO:0005524\|GO:0006457\|GO:0016887\|GO:0051082
	Ssu5g3458	533	Gene3D	-	34	530	IPR027413	-
	Ssu5g3458	533	CDD	TCP1_delta	19	532	IPR012717	GO:0005524\|GO:0006457\|GO:0016887\|GO:0051082
	Ssu5g3458	533	MobiDBLite	consensus disorder prediction	1	21	-	-
	Ssu5g3458	533	Gene3D	GroEL	218	377	IPR027409	-
	Ssu5g3458	533	ProSitePatterns	Chaperonins TCP-1 signature 3.	91	99	IPR002194	GO:0005524\|GO:0006457\|GO:0016887\|GO:0051082
	Ssu5g3458	533	SUPERFAMILY	GroEL apical domain-like	213	386	IPR027409	-
	Ssu5g3458	533	PANTHER	CHAPERONIN	13	531	IPR017998	GO:0140662
	Ssu5g3458	533	PRINTS	Tailless complex polypeptide 1 (chaperone) signature	91	110	IPR017998	GO:0140662
	Ssu5g3458	533	PRINTS	Tailless complex polypeptide 1 (chaperone) signature	61	79	IPR017998	GO:0140662
	Ssu5g3458	533	PRINTS	Tailless complex polypeptide 1 (chaperone) signature	381	403	IPR017998	GO:0140662
	Ssu5g3458	533	PRINTS	Tailless complex polypeptide 1 (chaperone) signature	39	55	IPR017998	GO:0140662
	Ssu5g3458	533	PRINTS	Tailless complex polypeptide 1 (chaperone) signature	415	427	IPR017998	GO:0140662
	Ssu5g3458	533	TIGRFAM	chap_CCT_delta: T-complex protein 1, delta subunit	19	532	IPR012717	GO:0005524\|GO:0006457\|GO:0016887\|GO:0051082

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Ssu5g3458	Ssu-Chr5	85328031	85329632	Dispersed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Ssu5g3458	201	427	EF-hand Containing Proteins	AT3G14270	24.898	8.72e-09	56.6

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Ssu5g3458	K09496		-	gmx:100786888	957.977

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Ssu5g3458	5	85328031	85329632	Ssu5g3458	5	85328031	85329632	ECH