Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g3456 ATGTTGAGGGGTCATCGTCGAATCGGTTGGCTCTGCATTGACTTCATGGAGATCGTAGTGGGATACAACAGGCTCAAGACATCTCATTTTGTGGTGGCTCTAGTGACCGTGGGAAGGCAGTGTCGTCGACTGACCAGGAACGTCTATTGTCGTGACAGGGATGGCACCACAGAAGGGGACCCTAGTGCTAACAAACCAAATGGGAGGCTGATGCAAAATCCACATAAGAATCACAAGCCAGAAACGTATGATGGCTTGAAATTGGATTTCTCTCCTGCAATTTTCAAGTCCTTAGAGAGTTACCTCCCAATCGACAGGCTCACCACCTCTCGTGACGAAAAGGTTAAGTACATGCGCGACATTTTGCTTGATTATCTACCGATAGGAACGCGAAACAAAGATCAAAAGCAAAGAGAATACAAACAGAGGATACTATCAAATTATAAGCCTCGGCACCAAGAGATATACGCTATTGATCCTACAACATTCTTTGTCCCATCATTTCTTAAAGCAATTCATGATAATACAAAAGAAAGCTTTAGAAGTATAATGTCAGAGCCTACTCCAGGCATTTTTACATTTGAGATGCTTCAACCACACTTTTGTGAGTTATTGTTATCTGAggttgaaaattttgaaaattgggtTAGCGCAACAAATTTTCCTCTTGTACGTCCCAATACAATGAATCAATATGGTGTTGTACTTGATGACTTTGGCCTTCAAACCATGCTTGACAAGCTTATGGAAGATTTTATTTGTCCTTTGTCAAAAGTTTTCTTTGCAAAAATTGGTGGATCAACTCTGGATTCTCATCATGGGTTTGTTGTTGAATATGGTATAGATAAAGATGTTGACTTGGGTTTCCATGTTGATGACTCAGAGGTAACCTTGAATGTTTGCTTGGGTAAGCAATTTTCTGGGGGGGAATTATTTTTTCGAGGCATGCGATGTGAAAAACATGTACATACAGAAAGTGATCCAAAGGAGACCTTTGATTATTACCATGTCCCTGGACGAGCTGTGCTTCATCATGGTCGTCATCGCCATGGTGCTAGAGCTACAACATCGGGTCATCGTGTCAACCTAATTTTGTGGTGCAGaagGTACTGTTCAGGAGGGAAGGCGAAACAACTGCATCATCTGTTGGTGATAAGTGGAAGTGGGGAAAAATAA 1176 0.4099 MLRGHRRIGWLCIDFMEIVVGYNRLKTSHFVVALVTVGRQCRRLTRNVYCRDRDGTTEGDPSANKPNGRLMQNPHKNHKPETYDGLKLDFSPAIFKSLESYLPIDRLTTSRDEKVKYMRDILLDYLPIGTRNKDQKQREYKQRILSNYKPRHQEIYAIDPTTFFVPSFLKAIHDNTKESFRSIMSEPTPGIFTFEMLQPHFCELLLSEVENFENWVSATNFPLVRPNTMNQYGVVLDDFGLQTMLDKLMEDFICPLSKVFFAKIGGSTLDSHHGFVVEYGIDKDVDLGFHVDDSEVTLNVCLGKQFSGGELFFRGMRCEKHVHTESDPKETFDYYHVPGRAVLHHGRHRHGARATTSGHRVNLILWCRRYCSGGKAKQLHHLLVISGSGEK 391
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g3456 391 Gene3D q2cbj1_9rhob like domain 191 368 - -
Ssu5g3456 391 SMART p4hc 189 368 IPR006620 GO:0005506|GO:0016705|GO:0031418
Ssu5g3456 391 PANTHER 2-OXOGLUTARATE (2OG) AND FE(II)-DEPENDENT OXYGENASE SUPERFAMILY PROTEIN-RELATED 62 368 - -
Ssu5g3456 391 MobiDBLite consensus disorder prediction 52 77 - -
Ssu5g3456 391 ProSiteProfiles Fe(2+) 2-oxoglutarate dioxygenase domain profile. 270 369 IPR005123 -
Ssu5g3456 391 PANTHER 2-OXOGLUTARATE AND IRON-DEPENDENT OXYGENASE DOMAIN-CONTAINING PROTEIN 2 62 368 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g3456 Ssu-Chr5 85300560 85320369 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g3456 - - ccaj:109804521 535.413
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu5g3456 5 85300560 85320369 Ssu5g3456 5 85300560 85320369 ECH