LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Ssu5g3454	ATGGTTAGGCATAACAGAACCCATCTCATTGGGGGACCTACTGAATATGATGTGATCAAGACACATGAACTTGAGAAGGTTCTGGCTATTGtgaattcttcttttttttttttgagcttTTGCAATTGTTACTGTGCTGAATATGGATTTTTGGATGGTCAGTACTTGCAAGATGCTGGCCTGTATGAGAATCAGCAGGAGGCAGTTAGTAGGGAGGAAGTGCTTGGCAGGCTAGACCAGATTGTGAAGATTTGGGTCAAAACCATTAGCCGTGCAAAGGGACTTAACGAGCAACTGGTGCAAGAAGCAAATGCCAAGATTTTTACTTCTGGCTCCTATCGACTAGGGGTACATGGCCCTGGAGCAGATATAGACACTCTTTGTGTGGGACCAAGGCATACATCGAGAGATGAAGATTTCTTTGGTGAGCTACATAAGATGCTATCTGAGATGCCAGAAGTAACAGAGTTGCACCCTGTGCCTGATGCTTATGTACCAGTGATGAAGTTCAAGTTCAATGGTGTTTCTATAGATCTCCTTTATGCAAAATTATCTTTGTGGGTTATTCCTGAAGACTTGGATATATCAGAGGAGTCAATATTACAAAATGCAGATGAGCAAACTGTTCGTAGTCTTAATGGTTGTAGAGTGACTGATCAAGTCCTGCGTTTGGTTCCAAATATTCAGAATTTTCGTACAACATTGAGGTGCATGAGGTTTTGGGCAAAGCATCGTGGTGTTTATTCAAATGTTGCAGGTTTTCTTGGTGCTATAAACTGGGCGTTGCTTGTTGCTCGAATATGCCAGCTATTTCCTAATGCACTTCCTAATATGTTAGTGTCTCGATTCTTCAGGGTGTATACTCAGTGGCATTGGCCAAATCCAGTAATGCTTTGTGCCATTGAAGAGGGATCACTTGGACTTCAAGTTTGGGATCCTAGAAGATATCCCAAGGATAGATTCCATCTAATGCCTATAATAACTCCTGCTTATCCTTGCATGAATTCTAGCTACAATGTGTCGTCAAGTACATTGCGTATTATGACGGAGGAGTTTCAGAGGGGAAATGAAATATGTGAgGCTATGGAAGCTAACAGGGCTGATTGGGACACTCTTTTTGAGCCTTATTCCTTTTTTGAAGcttataagaattatttgcaAGTAGACATATCAGCAGAGAATGCTGACGATCTTAGAAAATGGAAAGGCTGGGTTACATCTCGCCTGCGCCAGTTGACATTGAAAATTGAGAGGCACACTTATGGCATGCTTCAGTGTCATCCATATCCTGGTAATTTTTCAGACAAATCCAGACCTTTCCACTGCTCCTACTTCATGGGACTACAACGTAAGCAAGGAGTTCCTGTCAGTGATGGCGAACAGTTTGATATAAGACTAACTGTTGAAGAATTTAAGCATTCTGTCAATATGTACACTCTATGGAAACCTGGAATGGATATCCATGTCTCCCATGTGAAACGTCGCAATATACCTATCTTTGTATTTCCTGGTGGTGTTCGACCTTCCTGCCCATCTAAAGTAACTTGGGAGAGTAAGCGAAGCTCAGAATTAAGGGTTTCTGGCCATGGTGAAGCAGAAAAGTCTCAAGAAGGTAAAGTGGTTGTATTAGGAGCAAATGATGATAGGAAGAGAAAACAAGCAGAAGATAGTGTGGATAGCTTGAGATATTCCAAGTCCCTTGCATCTTTGCCTCCCTCCAGCAGGGAAGTTCATGAAGATGGAAATCCTACTAGTACTGCTAGTTCTTGCTCTGCGAAATGTAATGACTCAGAAATCAATAGTACGAGTGAACAACAGAGTGAGAAACCTGATTTGAAATCTTCAGGGGAGTGTCCTGGGGATAGAGAGACCAATGGATCAGTGAGAACCAACTTACAAGTTAATGCAACACTTACTGCCATGGATACATCTAGTTCTAAAGAAGCTGAAGAGCTAGCCATTGAGAAGATTATGTGTGGTCCATATGATGCACACCAAGTCTTTTCAGAAGAACCTGATGAGCTTGAAGATGATCTTGAGTATAGAAATCAAGTCAAAGATTTTGGTGGGAACATGAAAAACAGCAATTTGGACTCTTCAAACTCACAGACTGCAGTGGCCGCAGAACCAATTGTTCCTAAAAAGGAAACCACTTCTGCAACTTGTCTATACTCAAATGCTGGCTCGGAAGACCTTGAGCCGGCGGAGCTGACAGCACCATTATTAAGTGGGACTCCTGCACCTGTGCAACAGCGGAAGCCCCTTATCAGGTTGAATTTTACCACTTTAGGGAAAGCTACTGACAGAAGTTCTTAA	2316	0.4162	MVRHNRTHLIGGPTEYDVIKTHELEKVLAIVNSSFFFLSFCNCYCAEYGFLDGQYLQDAGLYENQQEAVSREEVLGRLDQIVKIWVKTISRAKGLNEQLVQEANAKIFTSGSYRLGVHGPGADIDTLCVGPRHTSRDEDFFGELHKMLSEMPEVTELHPVPDAYVPVMKFKFNGVSIDLLYAKLSLWVIPEDLDISEESILQNADEQTVRSLNGCRVTDQVLRLVPNIQNFRTTLRCMRFWAKHRGVYSNVAGFLGAINWALLVARICQLFPNALPNMLVSRFFRVYTQWHWPNPVMLCAIEEGSLGLQVWDPRRYPKDRFHLMPIITPAYPCMNSSYNVSSSTLRIMTEEFQRGNEICEAMEANRADWDTLFEPYSFFEAYKNYLQVDISAENADDLRKWKGWVTSRLRQLTLKIERHTYGMLQCHPYPGNFSDKSRPFHCSYFMGLQRKQGVPVSDGEQFDIRLTVEEFKHSVNMYTLWKPGMDIHVSHVKRRNIPIFVFPGGVRPSCPSKVTWESKRSSELRVSGHGEAEKSQEGKVVVLGANDDRKRKQAEDSVDSLRYSKSLASLPPSSREVHEDGNPTSTASSCSAKCNDSEINSTSEQQSEKPDLKSSGECPGDRETNGSVRTNLQVNATLTAMDTSSSKEAEELAIEKIMCGPYDAHQVFSEEPDELEDDLEYRNQVKDFGGNMKNSNLDSSNSQTAVAAEPIVPKKETTSATCLYSNAGSEDLEPAELTAPLLSGTPAPVQQRKPLIRLNFTTLGKATDRSS	771

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Ssu5g3454	771	SUPERFAMILY	PAP/OAS1 substrate-binding domain	226	375	-	-
	Ssu5g3454	771	Gene3D	-	54	373	-	-
	Ssu5g3454	771	Pfam	Nucleotidyltransferase domain	96	181	IPR002934	GO:0016779
	Ssu5g3454	771	Pfam	Poly(A) polymerase predicted RNA binding domain	377	437	IPR007010	GO:0003723\|GO:0043631
	Ssu5g3454	771	PANTHER	POLY A POLYMERASE	54	732	-	-
	Ssu5g3454	771	SUPERFAMILY	Nucleotidyltransferase	54	224	IPR043519	-
	Ssu5g3454	771	Gene3D	Poly(A) polymerase predicted RNA binding domain	377	492	-	-
	Ssu5g3454	771	MobiDBLite	consensus disorder prediction	524	631	-	-
	Ssu5g3454	771	Pfam	Poly(A) polymerase central domain	55	375	IPR007012	GO:0004652\|GO:0043631
	Ssu5g3454	771	CDD	NT_PAP_TUTase	71	225	-	-
	Ssu5g3454	771	MobiDBLite	consensus disorder prediction	578	609	-	-
	Ssu5g3454	771	MobiDBLite	consensus disorder prediction	543	559	-	-
	Ssu5g3454	771	Gene3D	Beta Polymerase, domain 2	63	219	IPR043519	-
	Ssu5g3454	771	PANTHER	POLY(A) POLYMERASE-LIKE PROTEIN	54	732	-	-
	Ssu5g3454	771	SUPERFAMILY	PAP/Archaeal CCA-adding enzyme, C-terminal domain	376	502	IPR011068	GO:0003723\|GO:0016779\|GO:0031123

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Ssu5g3454	Ssu-Chr5	85261294	85267904	Dispersed/Transposed

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Ssu5g3454	K14376		-	gmx:100816915	1145.18

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Ssu5g3454	5	85261294	85267904	Ssu5g3454	5	85261294	85267904	ECH