Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g3431 ATGAGCCGCCCAACGGAGGAAGATACTGCGGCGGGTAAGAATGAGGAAGAGGAATTCAACACTGGACCACTATCTGTACTCATGATGagtgttaaaaataatactcaGGTACTGATAAATTGTCGGAACAACAAAAAGCTTCTGGGTCGTGTAAGGGCTTTTGATAGGCACTGTAACATGGTTCTTGAAAATGTCAGGGAGATGTGGACTGAGGTGCCGAAGActggaaaaggaaagaaaaagggcCAGCCAGTCAACAAGGATAGATTTATCAGCAAAATGTTCCTCCGTGGAGATTCTGTCATCATTGTTCTTAGGAACCCCAAATGA 330 0.397 MSRPTEEDTAAGKNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKGQPVNKDRFISKMFLRGDSVIIVLRNPK 109
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g3431 109 PANTHER SMALL NUCLEAR RIBONUCLEOPROTEIN SM D2 1 109 IPR027248 GO:0008380|GO:0030532
Ssu5g3431 109 SMART Sm3 27 106 IPR001163 -
Ssu5g3431 109 Pfam LSM domain 30 104 IPR001163 -
Ssu5g3431 109 PANTHER SMALL NUCLEAR RIBONUCLEOPROTEIN SM D2 1 109 - -
Ssu5g3431 109 Gene3D - 17 109 - -
Ssu5g3431 109 MobiDBLite consensus disorder prediction 1 23 - -
Ssu5g3431 109 SUPERFAMILY Sm-like ribonucleoproteins 22 107 IPR010920 -
Ssu5g3431 109 CDD Sm_D2 19 108 IPR027248 GO:0008380|GO:0030532
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g3431 K11096 - ming:122058484 201.445
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu5g3431 5 84797306 84798512 Ssu5g3431 5 84797306 84798512 ECH