Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g3400 ATGGGTTCCGAAGGTTCCAGTGTCGTTGTTCCTAGGAATTTCAGATTATTGGAAGAGCTTGAGAGAGGTGAGAAGGGAATTGGAGATGGAACTGTTAGCTATGGAATGGATGATGCTGATGATATATACATGCAGTCATGGACTGGGACTATTATTGGCCCCCCTGGTACTGTTCACGAAGGGCGCATCTACCAGCTGAAATTATTTTGTGGCAAGGATTACCCAGACAACCCACCATCTGTTAGGTTTCAGACTAGGATTAACATGACTTGTGTCAACCAAGAAACTGGAGTGGTTGAGCCACATTTGTTTCCTATGCTTGCTAATTGGCAAAGAGAGTGTAGTATGGAAGACATTTTGATGCAATTGAAGAAAGAAATGATGTCTCCACAAAATCGGAAGCTAGCTCAGCCTCCTGAAGGCAATGAAGATGGCAGGATTGACCAAAAGGGGCTGGTGCTGAGATGTTGTATCGTGTAA 480 0.4417 MGSEGSSVVVPRNFRLLEELERGEKGIGDGTVSYGMDDADDIYMQSWTGTIIGPPGTVHEGRIYQLKLFCGKDYPDNPPSVRFQTRINMTCVNQETGVVEPHLFPMLANWQRECSMEDILMQLKKEMMSPQNRKLAQPPEGNEDGRIDQKGLVLRCCIV 159
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g3400 159 Gene3D Ubiquitin Conjugating Enzyme 2 144 IPR016135 -
Ssu5g3400 159 PANTHER UBIQUITIN-CONJUGATING ENZYME E2 VARIANT 1A-LIKE 8 144 - -
Ssu5g3400 159 Pfam Ubiquitin-conjugating enzyme 41 135 IPR000608 -
Ssu5g3400 159 ProSiteProfiles Ubiquitin-conjugating (UBC) core domain profile. 11 159 IPR000608 -
Ssu5g3400 159 PANTHER UBIQUITIN-CONJUGATING ENZYME E2 8 144 - -
Ssu5g3400 159 SUPERFAMILY UBC-like 9 142 IPR016135 -
Ssu5g3400 159 SMART ubc_7 14 158 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g3400 Ssu-Chr5 84288651 84293175 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g3400 K10704 - gmx:100820440 323.553
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu5g3400 5 84288651 84293175 Ssu5g3400 5 84288651 84293175 ECH