Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g3395 ATGCCAGCTCCAACAGAGATTGTTGCTCTTCTGAAGGCTCAAAGTATCCAACATGTCAGACTCTATGATGCTGACCGAGCCTTACTTCTTGCACTTGCTAACACAGGAATCCGTGTAACTGTTTCTGTTCCCAATGACCAGCTACTTGGCATTGGTCAGTCCAATGCCACCGCAGCAAACTGGGTTTCTCGAAATGTCATAGCTCATGTCCCTGCTACCAACATTACTGCCATATGTGTTGGATCAGAGGTCCTAACTACCCTCCCAAATGCTGCCCCTATTCTAGTCTCTGCCATAAATTTCATTCACTCTGCTCTTGTTGCTGCTAATCTGGATCGGCAAATTAAAGTCTCTAGTCCACACTCTTCTTCTATCATCCTTGACTCTTTCCCACCTTCCCAAGCATTTTTCAACCGTACTTGGAATCCAGTCATGGTTCCGTTGCTTAAATTTTTGCAATCAACAGGTTCATATCTTATGCTCAATGTGTACCCATATTATGATTACCAGCAGTCCAATGGTGCAATCCCACTGGATTATGCTTTATTCCGTCCCCTACCTCCAAATAAGGAAGCTGTTGATTCCAACACCCTGCTGCATTATACTAATGTTTTTGATGCAGTTGTTGATGCTGCTTATTTTGCAATGTCCGATTTGAACTTCACCAATATCCCTATTCTTGTGACTGAGTCAGGATGGCCCTCCAAAGGTGACTCGTCTGAGTCTGATGCAACTGTTGATAACGCTAACACTTACAACAGTAACTTGATCAGACATGTCCTTAACAATACGGGGACTCCTAAACATCCTGGAATTGCAGTTAGTACATATATTTATGAGCTTTACAATGAAGACTTAAGATCAGGTCCTGTCTCTGAAAAGAACTGGGGGCTGTTTTACGCTAACGGAGAACCAGTGTATACTTTACACTTGACTGGTGCTGGAATTATATTTGCAAATGATACAACAAACCAAACCTTTTGTGTCACAAAGAGTAATGCTGACCCTAAGATGTTACAGGCAGCACTTGATTGGGCTTGTGGGCCAGGGAAGGTGGATTGTTCCCCTTTGCTGCAGGGTCAACCATGTTATGGACCTGATAACGTAGTTGCACATTCTACATATGCTTTTAATGCATATTATCAGAAGATGGATAAATCTCCTGGGAGTTGTGATTTCAAAGGGGTTGCCACTATCACTACTACCGACCCAAgCCATGGTTCTTGTATATTTCCGGGAAGCCATGGTAGAAAGGGCACCAGAATAAATGGCACATCACTGGCCCCATCTAATTCCACAAGTTCAGGCTGCTTGTCTCAATACAACTACAATGGTGGATCTTTCACAAGTTCGTTGATTCTAGCTGTTTTACTTTTGTGTGCAGTTGTGTAA 1392 0.4296 MPAPTEIVALLKAQSIQHVRLYDADRALLLALANTGIRVTVSVPNDQLLGIGQSNATAANWVSRNVIAHVPATNITAICVGSEVLTTLPNAAPILVSAINFIHSALVAANLDRQIKVSSPHSSSIILDSFPPSQAFFNRTWNPVMVPLLKFLQSTGSYLMLNVYPYYDYQQSNGAIPLDYALFRPLPPNKEAVDSNTLLHYTNVFDAVVDAAYFAMSDLNFTNIPILVTESGWPSKGDSSESDATVDNANTYNSNLIRHVLNNTGTPKHPGIAVSTYIYELYNEDLRSGPVSEKNWGLFYANGEPVYTLHLTGAGIIFANDTTNQTFCVTKSNADPKMLQAALDWACGPGKVDCSPLLQGQPCYGPDNVVAHSTYAFNAYYQKMDKSPGSCDFKGVATITTTDPSHGSCIFPGSHGRKGTRINGTSLAPSNSTSSGCLSQYNYNGGSFTSSLILAVLLLCAVV 463
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g3395 463 Gene3D Glycosidases 1 315 - -
Ssu5g3395 463 Pfam X8 domain 327 398 IPR012946 -
Ssu5g3395 463 PANTHER GLUCAN ENDO-1,3-BETA-GLUCOSIDASE-LIKE PROTEIN 1 454 - -
Ssu5g3395 463 SUPERFAMILY (Trans)glycosidases 2 310 IPR017853 -
Ssu5g3395 463 ProSitePatterns Glycosyl hydrolases family 17 signature. 224 237 IPR000490 GO:0004553|GO:0005975
Ssu5g3395 463 Gene3D - 320 412 - -
Ssu5g3395 463 PANTHER GLUCAN ENDO-1,3-BETA-GLUCOSIDASE BG1-RELATED-RELATED 1 454 IPR044965 GO:0004553|GO:0005975
Ssu5g3395 463 Pfam Glycosyl hydrolases family 17 2 310 IPR000490 GO:0004553|GO:0005975
Ssu5g3395 463 SMART X8_cls 326 411 IPR012946 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g3395 Ssu-Chr5 84192400 84194805 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu5g3395 1 405 Glycoside Hydrolase AT2G01630 79.753 0.0 685
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g3395 K19891 - gmx:100820015 869.766
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu5g3395 5 84192400 84194805 Ssu5g3395 5 84192400 84194805 ECH