Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g3386 ATGACCGAGAAGGTTGCTGTTGGATCATGGTCCACTGGCTTTTGCGACTGCTTCTCTGACTGCGGCGCTTGTTGCCTCACGCTTTGGTGCCCCTGTGTTAGCTTCGGAAGGATAGCCGAGATCCTCGACAAAGGATCAACTCCTTGTTGTCTACATGGAACATTTTTCTACCTACTTGCTGTTTTTACTCATTTCGGGGCTAGTATCTACGCATGGATGTATCGTACAAAATTAAGGAGGATGTATGGGATCGAGGGACACCAATGTACTGATTGTTTGGCGAGTTGTTTCTGTCCCCATTTATCCATTTGCCAGGAGTATCGTGAGCTCAAAGCCCGTGGATTTGACATGTCTTCTGGTTGGGAAGGGAATGTGCAAATGCACACACGTGGCGTGACGGCAGCTCCGGCAGTGGAAGGTGGCACGAGCCGTTAG 435 0.4989 MTEKVAVGSWSTGFCDCFSDCGACCLTLWCPCVSFGRIAEILDKGSTPCCLHGTFFYLLAVFTHFGASIYAWMYRTKLRRMYGIEGHQCTDCLASCFCPHLSICQEYRELKARGFDMSSGWEGNVQMHTRGVTAAPAVEGGTSR 144
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g3386 144 Pfam PLAC8 family 10 109 IPR006461 -
Ssu5g3386 144 PANTHER PLAC8 MOTIF-CONTAINING PROTEIN-RELATED 7 141 - -
Ssu5g3386 144 PANTHER DUF614 FAMILY PROTEIN-RELATED 7 141 IPR006461 -
Ssu5g3386 144 TIGRFAM A_thal_Cys_rich: uncharacterized Cys-rich domain 9 111 IPR006461 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g3386 Ssu-Chr5 84039422 84041835 Dispersed/Proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g3386 - - lang:109330762 224.557
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu5g3386 5 84039422 84041835 Ssu5g3386 5 84039422 84041835 ECH