Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g3375 ATGAAGAATAAGCAGCAAGAACGCTCCCCTGCTGCAGCCAGACTCTTGAGTGCTCAACAACACATGTTCAACTTCTTCTCTCATGTTCTAGTATTTTCCGCTGGTTTGCTCATTGGAATCACCCTCACTTTCTGTCTCAAAGACTTGTCCCTCAACGTTCAATTCCACCAACTCTTCCTTCCATCCCTCTCATCTTtgtctcctcctcctccttctcctcCCATCTCAACGTCAAATAATCAGACAAAAGCCACCACCACCTTAACCCGAAATGGGTTAAGGGGTTTCTTGAGGCCAACCAAGGTTATGCATGATATGACAGAGGAAGAGTTGCTGTGGAGAGCTTCTATGGTTCCTAGGATCAAGGAACCACCGTACGAACAGACCCCAAAGGTTGCATTTATGTTTTTGACCAAAGGGCCTGTGTTTTTGGGTCCACTGTGGGAGAGATTCTTCAAAGGAAATGAAGGATTCTATTCTATCTATGTCCATTCCCATCCTTCTTTCAATGAAACAGTGCCTGAAAGTTCTGTGTTTCATGGCCGCAGAATCCCAAGCAAGGAGGTAAGATGGGGTAACTTTAACATTGTAGGGGCAGAGAGATGTCTACTAGCCAATGCACTGCTTGACTTCTCCAACCAACGTTTTGTTCTTCTCTCAGAGTCATGCATTCCTTTGTTCAATTTCTCAACCATCTATAACTACCTTATGAACTCAACCGAGACCTTTGTGGAAGCCTATGACATGCCAGGTGCAGTGGGGCGAGGCAGGTACAACCCCAGGATGAGGCCACTGATTTGGCTTTCGCAGTGGAGAAAGGGGTCCCAATGGTTTCAAATAGACCGTTCCCTTGCCATTGAGATAGTCTCTGACCAGCAATACTTCCCCGTGTTCAAGAAGCATTGCAGGAATAGATGTTATGGTGATGAGCACTACCTGCCAACGTTCGTTAGTATCAAGTTTTGGAAGAGGAACTCAAACAGAACTTTGACGTGGGTTGATTGGTCAAGGGGTGGACCCCATCCAGCCAGGTTTATGAGAAGGGATGTAACTGTTGAATTTTTGAAGAGGCTAAGGCATGGGAGAACATGTCAGTACAATGGGAAGACCGCCAATATTTGCCACTTGTTTGCAAGAAAGTTCATGCCGCAGGCTTTAGATAGATTGCTGAGGTTTGCTCCACAGATAatgcaatttaattga 1203 0.4422 MKNKQQERSPAAARLLSAQQHMFNFFSHVLVFSAGLLIGITLTFCLKDLSLNVQFHQLFLPSLSSLSPPPPSPPISTSNNQTKATTTLTRNGLRGFLRPTKVMHDMTEEELLWRASMVPRIKEPPYEQTPKVAFMFLTKGPVFLGPLWERFFKGNEGFYSIYVHSHPSFNETVPESSVFHGRRIPSKEVRWGNFNIVGAERCLLANALLDFSNQRFVLLSESCIPLFNFSTIYNYLMNSTETFVEAYDMPGAVGRGRYNPRMRPLIWLSQWRKGSQWFQIDRSLAIEIVSDQQYFPVFKKHCRNRCYGDEHYLPTFVSIKFWKRNSNRTLTWVDWSRGGPHPARFMRRDVTVEFLKRLRHGRTCQYNGKTANICHLFARKFMPQALDRLLRFAPQIMQFN 400
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g3375 400 MobiDBLite consensus disorder prediction 69 90 - -
Ssu5g3375 400 Pfam Core-2/I-Branching enzyme 132 358 IPR003406 GO:0016020|GO:0016757
Ssu5g3375 400 PANTHER CORE-2/I-BRANCHING BETA-1,6-N-ACETYLGLUCOSAMINYLTRANSFERASE FAMILY PROTEIN-RELATED 7 399 IPR044174 GO:0016757
Ssu5g3375 400 PANTHER CORE-2/I-BRANCHING ENZYME 7 399 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g3375 Ssu-Chr5 83789398 83792402 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g3375 - - gmx:100815747 646.736
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu5g3375 5 83789398 83792402 Ssu5g3375 5 83789398 83792402 ECH
Ssu5g3375 5 83789398 83792402 Ssu5g3375 5 83789398 83792402 PCT