Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g3374 ATGGCGGGGTCTTCGATCATGGAGAACCTCTTCCAACGAACACTGGAGGATCTAATCAAAGGTATGCGCCTCCAACTGATCGGCGAATCGGCGTTCATCTCGAAGGCCACGGAGGAGATCCGTCGCGAGATCAAATCCACCGACCAGCACACGAAATCCACGGCGCTCCAGAAGCTATCGTTCCTCTCCGCCGTGCACGGCGTGGACATGTCGTGGGCGTGCTTCCACGTGGTGGAGGTGATGTCCTCGTCGCGGTTCGCGCACAAGAGGGTCGGTTACCACGCGGCGTCGCAATCCTTCCACGACGACACGCCGGTGCTCCTCCTCATCACCAACCAGCTCCGCAAGGACCTCTCCTCCACCAACGAGTTCGAGGCGAGTCTCGCGCTCGATTGCCTCTCCCGAATCGCCACCGTCGACCTCGCTAGGGATTTGACCCCCGAGGTTTTCAAATTGCTCTCCACCGCTAGGGTTTTCGTTAGGAAGAAGGCTATTGCCGTCGTTTTGAGGGTCTTCGATAAGTACCCCGATGCCGTTAGGGTTTGCTTTAAACGCTTGGTTGAGAATCTCGAGAGTTCGGATCCTCAGGTTGTGACGGCCGTGATCGGGGTTTTCTGTGAGCTGGCTTCGAAGGATCCGAGGTCGTATCTTCCCCTGGCGCCGGAGTTTTATAGGATTTTGGTTGATTCTAAGAACAATTGGGTTTTGATTAAGGTTTTGAAGGTGTTTGCTAAGTTGGCTCCCTTGGAAACTAGGTTGGGGAAGAGGATTGTGGAGCCTGTTTGTGAGCATATGAGGCGGTCTGGGGCGAAGTCGTTGGTGTTTGAGTGTGTTAGGACTGTACTCACTAGCTTGAGTGGTTATGAGTCTGCTGTTAGGCTCGCGGTTGAGAAGGTTAAGGAGTTGGTGGTTGATCAGGATCCCAATCTAAGGTATCTGGGGCTGCAGGCACTTTTGGTTGCTGCGCCAGAGCACTTGTGGGCGGTGATGGAGAACAAGGAGGCGGTGGTTAAGTCGTTGAATGATGATGATTCAAATATTAAGATCGAGTCTCTACAACTGTTGATGGCCATGGTGTCTGAGAGCCATGTCGCGGATATCTCCAGGGTGTTGCTCAATTACGCGTTGAAGTCTGACCCGGAGTTTTGCAATGAGATTTTGGGTTCCGTTTTGACGACGTGTTGTAGGAATGTGTATGAGATTGTTGTTGACTTTGATTGGTATGTGTCTCTTCTTGGAGAAATGGCAACGATTCCTAATTGCCGGAAGGGGGAAGAGATTGAGACTCAGCTCGTTGATATTGGCATGAGAGTTAGGGATGCTAGAATGCAGCTTGTTCGGGTTGGGCGGGATCTGTTGATTGACCCTGCGTTACTGGGTAATGTCCACTTGCATAGGATATTGTGTGCTGCTGCTTGGGTTGCTGGAGAGTATGTTGAGGTTGTGAGCAATCCTTTTGAACTCATGGATGCACTCCTACAGCCTCGTACCAGTCTCTTGCCACCATCAATTAGAGCAGTTTATATTAATTctgttcttaaaattttaattttttgcctAGACTGTTACCTTACGCAAAATGAAGGTACTGCATCCTTGGATTCCGGTAATTTGGCTGGGGGACAGTCGGAGTTGTTTAGTGTAAAAAATGACTCTGATGCTGCTGAATTGGCAATGTATGAAGGTTCAAATTATGAACAGGATGAGGGTTTTAACCCAAGGAATACAACTGAATCTTCTGAAGATCTTTCCATTGAAAATGACATAGATAGAGTTGTCACTCATGGTCAAACATTTACTCCTCCTCCTCTTTTGGCAGAGAAGAATTTCACGCATGAATCTATTGGGAGCCTATTGAAtcgaattgaattaatttttggcCCACTAGTAGCAAACCAGCATGTTGAAGTGCTGGAGAGAGCACGTAACATACTTTCCCTTGTTCAgttgattaaaaaagaaataattgataattcagTCCAGAATGTGAACATTATGGACAAGAAAGATACTCGAGTTTCGGCTATTATCAATTTGATGCGTGATGCTTTTACTATGGAACTTGGTCCAGTCTCAACAAGTGCACAGGGAAGAGTTGCTGTGCCAGAGGGATTAGTTCTTAAAGAGAATCTTGATGACTTACGAGCAATATGTGGTGATATTGAACTACCTTCATCAAGTTCGTTTTGCACAGGAGGCCCTCACCTTACCACTACTTCAGATGCTTCTTCATCTGCTATTCTGAAAAATGAAGAGTCAGGGCTATTGAATGAATCTACATCCTTGATTGAACACCGTAAGCGGCATGGATTATATTATCTTCCTTCAGAAAAGAGTGAGACTAATCCACATGATTATCCTCCTGCAAATGATCCAAAGTCAAACAGTAATATAAATGATGAAGCTGCAGAGCTAGTCAAGCTGACAGAGCAATCACTTCTACTGAAGAAAAGGACAAACCAAACAAAGCCCAGGCCTGTAGTGGTGAAATTGGATGATGGAGATGTGGCACCGATTTCAGTCAAAAGACCAGAGCCAAGGGATGATTCTCTTTCTGGTGCTATAAAAGATGTTCTTCTAGGAAGCGAAACCGGACCAAGTATATCTCGAAGTAATCCTTCTGATAAGTCATCAAGGAAgcagaaagagaaaaagaaactaaGCACAAATATTCGATCTGAAATGAAGGAAAATGTAGTTGATGCAGAAAAGCCTGACCTTGAAAATCCAAATTCAAGTAGCAAAAATCATGGTCATACTAAAGAGAGAAGGCacagaggaaaagaaaagattgTTGAGGGGGAAGAGCATGATCAgaggggaaagaaaaagagtggCCACAGCCAGGGTAGGCGAAAAACTCATCAAAGGGCAAAGTCACCCTTAAATGTGGTTTCCCAAACACCAGTAATTCCTGATTTTCTTTTGTAG 2931 0.4442 MAGSSIMENLFQRTLEDLIKGMRLQLIGESAFISKATEEIRREIKSTDQHTKSTALQKLSFLSAVHGVDMSWACFHVVEVMSSSRFAHKRVGYHAASQSFHDDTPVLLLITNQLRKDLSSTNEFEASLALDCLSRIATVDLARDLTPEVFKLLSTARVFVRKKAIAVVLRVFDKYPDAVRVCFKRLVENLESSDPQVVTAVIGVFCELASKDPRSYLPLAPEFYRILVDSKNNWVLIKVLKVFAKLAPLETRLGKRIVEPVCEHMRRSGAKSLVFECVRTVLTSLSGYESAVRLAVEKVKELVVDQDPNLRYLGLQALLVAAPEHLWAVMENKEAVVKSLNDDDSNIKIESLQLLMAMVSESHVADISRVLLNYALKSDPEFCNEILGSVLTTCCRNVYEIVVDFDWYVSLLGEMATIPNCRKGEEIETQLVDIGMRVRDARMQLVRVGRDLLIDPALLGNVHLHRILCAAAWVAGEYVEVVSNPFELMDALLQPRTSLLPPSIRAVYINSVLKILIFCLDCYLTQNEGTASLDSGNLAGGQSELFSVKNDSDAAELAMYEGSNYEQDEGFNPRNTTESSEDLSIENDIDRVVTHGQTFTPPPLLAEKNFTHESIGSLLNRIELIFGPLVANQHVEVLERARNILSLVQLIKKEIIDNSVQNVNIMDKKDTRVSAIINLMRDAFTMELGPVSTSAQGRVAVPEGLVLKENLDDLRAICGDIELPSSSSFCTGGPHLTTTSDASSSAILKNEESGLLNESTSLIEHRKRHGLYYLPSEKSETNPHDYPPANDPKSNSNINDEAAELVKLTEQSLLLKKRTNQTKPRPVVVKLDDGDVAPISVKRPEPRDDSLSGAIKDVLLGSETGPSISRSNPSDKSSRKQKEKKKLSTNIRSEMKENVVDAEKPDLENPNSSSKNHGHTKERRHRGKEKIVEGEEHDQRGKKKSGHSQGRRKTHQRAKSPLNVVSQTPVIPDFLL 976
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g3374 976 SUPERFAMILY ARM repeat 30 663 IPR016024 -
Ssu5g3374 976 MobiDBLite consensus disorder prediction 875 910 - -
Ssu5g3374 976 MobiDBLite consensus disorder prediction 944 958 - -
Ssu5g3374 976 Gene3D - 4 546 IPR011989 -
Ssu5g3374 976 PANTHER DELTA ADAPTIN-RELATED 3 975 IPR017105 GO:0015031|GO:0030123
Ssu5g3374 976 MobiDBLite consensus disorder prediction 774 797 - -
Ssu5g3374 976 PIRSF AP3_delta 1 970 IPR017105 GO:0015031|GO:0030123
Ssu5g3374 976 MobiDBLite consensus disorder prediction 926 943 - -
Ssu5g3374 976 Pfam Adaptin N terminal region 31 493 IPR002553 GO:0006886|GO:0016192|GO:0030117
Ssu5g3374 976 MobiDBLite consensus disorder prediction 859 976 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g3374 K12396 - gmx:100815221 1669.44
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu5g3374 5 83766853 83769783 Ssu5g3374 5 83766853 83769783 ECH