Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g3368 ATGATGACGTGTTCTTCAGAGACGATCAACATCGCCGCGACTACACAGAAACTTGATGTTGATAACAGAATTTCTCTCCGCTTCTACTACAGGATCGCCGATAATATTCTCAAACAGGCTGATATCTTTCGTGCAgagaaaaatattgttgatCTATATATCATGCTCCTAAGATTTTCTAGTTTGGCCTCTGAGACAATACCACGTCACCGAGATTATAGATCATCTCCACAAGGCAAGAAAGAAGCTTTGAGAAAGAAATTGTTAAATTCTGTGAATGAGCTGGAGAAATTGAAACCAAAGGTGCAACAGAAGATCATTGAGTATAACAGCGGGCGAGCATACCACCATAATGGGTCAGAAAAATGTCATTCAAATAATTTGATGGAATTTTCTCCAGTGAAAAAAACTTTGGCTAGTTATGATCaaataaagGCAGTCATACCAACCACTGGAGAGTTTGTTTACCAACGATCAAGGGGCCAGCAGTTTTCTAGTGTAAGGCCTGTGGAAGAGAATATGAGGAGACTATCTCTAAGTCTCCCACGTCCAAAGGAGGAAACTCTCTCCAGACATTCTATTCTAGGTCCCAATGGGCTGAAAGGGCAGTGGCGACCACCTGCAAGTGATAAAGGGGTCAGGTATCCAACCATCATAGATCTGTCTCCAGTTGAAATTCCAAGCCTTCAACAACCCTTGGAAGATGGATGTctgaataaaaatgataatagcATTTCAGAACAACATAGATCAGATTTAGAATCAATTCTTACCCAGAGTGACAACTGCCAGGCAAAGCATGCTGATGAAGCTccttctcttatctcttttgaagCAACAGAAATCCCTGCTCAGATAGAAGTTATCAGACAGCCTTCTCCTCCACCTGTACTTGCTGAAGTCCAAGATTTGGTTCCTGCAGTGTCACCTCATGTTAATGAGGAAGGATGTAAGACAGAGATTCCAACATCGGATAGTATTGTTCATGCTGAGTCTCCTCTACAGCTACACATTTCAACTTCTATGATGGAGAGTTTTATGAAGCTTGCCAAGTCAAACACTGACAAAAATTTAGAGACTTGTGGTATCCTTGCAGGTTTGCTTaaaaacagaaaattttatattactgCTCTAATAATCCCAAAGCAGGAGTCAACATCCAGTTCTTGTCAAGCTACAAATGAAGAGGAGATATTTGAAGTACAGGATAAGCAATCTCTTTTCCCCCTTGGGTGGATCCATACGCATCCTACACAATCTTGTTTCATGTCATCAATTGATCTACACACCCATTACTCATATCAGATTATGCTGCCAGAAGCTGTTGCAATAGTTATGGCACCAACAGACAGTTCAAGAACCCATGGCATTTTTCGGTTGACAACCCCTGGTGGAATGTCGGTCATTAGACAATGCCAGCAACGTGGCTTTCATCCACATAATCAACCTCCAGATGGTGGTCCCATTTACAATACATGTACAGATGTTTACATGAACCcagatttaaaatttgatgtcATTGATCTTCGATGA 1533 0.3907 MMTCSSETINIAATTQKLDVDNRISLRFYYRIADNILKQADIFRAEKNIVDLYIMLLRFSSLASETIPRHRDYRSSPQGKKEALRKKLLNSVNELEKLKPKVQQKIIEYNSGRAYHHNGSEKCHSNNLMEFSPVKKTLASYDQIKAVIPTTGEFVYQRSRGQQFSSVRPVEENMRRLSLSLPRPKEETLSRHSILGPNGLKGQWRPPASDKGVRYPTIIDLSPVEIPSLQQPLEDGCLNKNDNSISEQHRSDLESILTQSDNCQAKHADEAPSLISFEATEIPAQIEVIRQPSPPPVLAEVQDLVPAVSPHVNEEGCKTEIPTSDSIVHAESPLQLHISTSMMESFMKLAKSNTDKNLETCGILAGLLKNRKFYITALIIPKQESTSSSCQATNEEEIFEVQDKQSLFPLGWIHTHPTQSCFMSSIDLHTHYSYQIMLPEAVAIVMAPTDSSRTHGIFRLTTPGGMSVIRQCQQRGFHPHNQPPDGGPIYNTCTDVYMNPDLKFDVIDLR 510
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g3368 510 Coils Coil 85 105 - -
Ssu5g3368 510 PANTHER AMSH-LIKE UBIQUITIN THIOESTERASE 5 510 - -
Ssu5g3368 510 Pfam JAB1/Mov34/MPN/PAD-1 ubiquitin protease 333 439 IPR000555 GO:0005515|GO:0008233|GO:0008237
Ssu5g3368 510 Gene3D Cytidine Deaminase, domain 2 318 510 - -
Ssu5g3368 510 Gene3D - 1 127 - -
Ssu5g3368 510 SUPERFAMILY JAB1/MPN domain 335 466 - -
Ssu5g3368 510 CDD MPN_AMSH_like 335 510 IPR044098 GO:0016579|GO:0061578|GO:0070536|GO:0140492
Ssu5g3368 510 ProSiteProfiles MPN domain profile. 336 466 IPR037518 -
Ssu5g3368 510 MobiDBLite consensus disorder prediction 183 208 - -
Ssu5g3368 510 Pfam USP8 dimerisation domain 10 105 IPR015063 -
Ssu5g3368 510 PANTHER AMSH-LIKE PROTEASE 5 510 - -
Ssu5g3368 510 SMART pad1_6 335 463 IPR000555 GO:0005515|GO:0008233|GO:0008237
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g3368 Ssu-Chr5 83654641 83666541 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g3368 K11866 - gmx:100800636 932.939
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu5g3368 5 83654641 83666541 Ssu5g3368 5 83654641 83666541 ECH