Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g3363 AtgagtagtagtagtagtagtagtagtagtgaGAAAAGGTTCATTCCTATTTATATGGAAGAGGCTGCAGTGGACTTGTTAAACCATGTGGTGAAGGTGAAGGACAAGGGCTGGATTCCACTCATCATTCCATTCATTTTGATTGCTTGGGCTATTCACAGATGGCTCTTCTCTTTCTCCAATTGGCTTCTCCTTGCACTTGCTCTATGGGCATCTGCACAATATGGGAATTATCAGCGCAGACTACTTGAGGAAGACTTGAATAAGAAATGGAATCGGATCCTACTCAACACCTCGCCCGTGACACCATTAGAACACTGTGAGTGGTTGAATCTGCTGTTGACACAAATTTGGTCCAACTATTTTAACCCAAAGTTCTCTAGAAGGTTATCAGCCATAGTTGAGAAACGCTTAAAGCTCCGGAAACCAAGATTTATAGAAAAAGTTGAGGTGCAAGATTTTTCACTTGGATCATGCCCTCCAAGTTTTGGTCTTCAAGGGATGCGATGGTCAACCTATGGCGGTCAGCGAGTCCTGAGAATGGGTTTTGATTGGGACACGAGTGAAATGAGCATTTTGATGCTTGCTAAGCTTTCTGTTGGAACTGCCAGAATTGTGATTAACAGTCTTCATATCAAGGGTGATCTTCTGGTGATACCAATTCTAGATGGAAAAGCACTTCTGTATTCATTTTTATCGACACCTGAGGTGAGAATAGGAATTGCATTTGGAAGCGGAGCAAGCCAATCAGCCACAGAGTTGCCTGGTGTTTCTCCATGGCTGGTTAAACTTTTTACTGATACCTTAACTAAAACCATGGTGGAACCTCGGCGACGTTGTTTAAGTTTGCCTGTGGTTGGTTTGAGGAAAACTGCTGTTGGAGGCATTATATATGTGTCGGTGATTTCAGCAAACAGACTTTCTAGGATTAACTTCAAGAGTAGCCCATCTTGGAGGCTACAAAATAGCATAATCAATGGTTGTTCAGAAGACAACCCGGATGACAAGGACCTACATACATTTGTAGAGGTAGAAGTGGAGGAATTGACAAGGAGGACGGGTATGAGCCCTGGCTCAACTCCAATGTGGGATACAACATTTAATATGGTTTTACATGATAATAAAGGAATTGTTCGCCTCAATCTTTATGAGTGTCCCTCCAGTGGTGTCAAGTGTGACTACCTAGCAAGTTGTGAAATCAAGAAGATGATGCATGTTGAAGATGATTCAACAATAATGTGGGCAATAGGACCTAATTCTAGTGTCATAGCAAAGCATGCAAAGTTTTGTGGAGATGAAGTTGAAATGGTTGTCCCATTTGAGGGGACCAACTCAGCAGAGTTGAAGGTGAAGATTATAGTAAAAGAGTGGCAGTTTTCTGATGGTTCGCATAGCTTGAACAACCTCCGTGCTAATTCTCAGCGATCACTTGTTGGATCATCAAGTCTTCTGTCAAAAACTGGAAGGAAACTTAAGATAACTATTATAGAAGCAAAGGATCTCGCTTCAAAAgacaaatttggaaaatttgacCCATACATTAAATTGCAGTATGGAAAGGTTGTCAAGAGAACAAAGGTTGCTTCTCCTCCTTCTACCCCAAATCCTGTCTGGAATCAATCATTTGAATTTGATGAGATTATTGGAGATGAATACCTAAATGTAAAATGCTTTAGTGAAGAAATTTTTGGAGATGAAAATATTGGTAGTGCAAATGTAAATTTGGAAGGACTGGAGGACGGGTCAATCAAGGATGTATGGATCCCTCTTGAAGGAACGAGTTCTGGTGAATTAAGACTTAAAATTGAAGTAGTTAGGATGGAGGACCAAGAAGGATCAAGGGGTGGTTGGATAGAACTTCTTGTGATTGAAGCAAGGGACCTTATTGCTGCCGATCTTCGAGGGACAAGTGATCCTTATGTGAGGGTAAACTATGGAAACTTGAAGAAAAGGACAAAGGTTATACACAAAACTCTCAACCCTCGTTGGAACCAGACCTTAGAGTTCCTTGACGACGGCAGTCCCCTGATACTGCATGTTAAAGACCACAATGCTTTACTACCCACGTCAAGTATAGGTGATTGTGTCGTAGAATATCAAAGGTTGCCTCCAAACCAGATGTCTGACAAGTGGATACCTCTCCAAGGGGTGAAAAGTGGTGAGATCCACATCCAAATCACAAGAAAAGTTCCAGAGATGCAAACAAGACGTACTCTAGACTCTGAACCTTTGTTAAGTAAATCACACCAAATTCCTAGTCAGATGAGAGAGATGGTGAAAAAGTTTCGATCATTAATAGAGGAAGGAAATCTTGAAGGACTGTCTACAACTTTGAGTGAGTTAGAAAGTCTAGAGGATATACAGGAAGGGTATATGCAACAGTTGGAGACTGAGCAAATGCTTCTTCTGAGCAAAATAAATGAACTGGGTCAGGAGATCATCAATTCTTCCTCTTCCCTCGCCAGTAGTCCTTCTCAAAGTGGAAATTGA 2490 0.406 MSSSSSSSSSEKRFIPIYMEEAAVDLLNHVVKVKDKGWIPLIIPFILIAWAIHRWLFSFSNWLLLALALWASAQYGNYQRRLLEEDLNKKWNRILLNTSPVTPLEHCEWLNLLLTQIWSNYFNPKFSRRLSAIVEKRLKLRKPRFIEKVEVQDFSLGSCPPSFGLQGMRWSTYGGQRVLRMGFDWDTSEMSILMLAKLSVGTARIVINSLHIKGDLLVIPILDGKALLYSFLSTPEVRIGIAFGSGASQSATELPGVSPWLVKLFTDTLTKTMVEPRRRCLSLPVVGLRKTAVGGIIYVSVISANRLSRINFKSSPSWRLQNSIINGCSEDNPDDKDLHTFVEVEVEELTRRTGMSPGSTPMWDTTFNMVLHDNKGIVRLNLYECPSSGVKCDYLASCEIKKMMHVEDDSTIMWAIGPNSSVIAKHAKFCGDEVEMVVPFEGTNSAELKVKIIVKEWQFSDGSHSLNNLRANSQRSLVGSSSLLSKTGRKLKITIIEAKDLASKDKFGKFDPYIKLQYGKVVKRTKVASPPSTPNPVWNQSFEFDEIIGDEYLNVKCFSEEIFGDENIGSANVNLEGLEDGSIKDVWIPLEGTSSGELRLKIEVVRMEDQEGSRGGWIELLVIEARDLIAADLRGTSDPYVRVNYGNLKKRTKVIHKTLNPRWNQTLEFLDDGSPLILHVKDHNALLPTSSIGDCVVEYQRLPPNQMSDKWIPLQGVKSGEIHIQITRKVPEMQTRRTLDSEPLLSKSHQIPSQMREMVKKFRSLIEEGNLEGLSTTLSELESLEDIQEGYMQQLETEQMLLLSKINELGQEIINSSSSLASSPSQSGN 829
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g3363 829 ProSiteProfiles Synaptotagmin-like mitochondrial lipid-binding proteins (SMP) domain profile. 103 284 IPR031468 GO:0008289
Ssu5g3363 829 PANTHER PLANT SYNAPTOTAGMIN 8 823 - -
Ssu5g3363 829 SMART C2_3c 490 587 IPR000008 -
Ssu5g3363 829 SMART C2_3c 296 415 IPR000008 -
Ssu5g3363 829 SMART C2_3c 617 711 IPR000008 -
Ssu5g3363 829 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 290 414 IPR035892 -
Ssu5g3363 829 CDD C2 618 714 - -
Ssu5g3363 829 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 616 727 IPR035892 -
Ssu5g3363 829 Coils Coil 792 812 - -
Ssu5g3363 829 ProSiteProfiles C2 domain profile. 594 712 IPR000008 -
Ssu5g3363 829 Gene3D C2 domain 608 729 IPR035892 -
Ssu5g3363 829 Gene3D C2 domain 476 607 IPR035892 -
Ssu5g3363 829 PANTHER OS01G0128800 PROTEIN 8 823 - -
Ssu5g3363 829 Pfam C2 domain 490 590 IPR000008 -
Ssu5g3363 829 Pfam C2 domain 619 714 IPR000008 -
Ssu5g3363 829 Pfam C2 domain 296 384 IPR000008 -
Ssu5g3363 829 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 489 606 IPR035892 -
Ssu5g3363 829 ProSiteProfiles C2 domain profile. 469 588 IPR000008 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g3363 Ssu-Chr5 83576008 83582729 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu5g3363 431 751 Lipid Metabolism Gene Families AT3G57880 25.065 1.57e-11 66.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g3363 - - ccaj:109803570 1402.11
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu5g3363 5 83576008 83582729 Ssu5g3363 5 83576008 83582729 ECH
Ssu5g3363 5 83576008 83582729 Ssu5g3363 5 83576008 83582729 PCT