Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g3362 ATGCGATTGAGCATCACCCCTGCTTTACTCTCATCACTCCCCCTTGCCTCACCCTCCTCCTCCAAATTCagattcaaattcaataattcCTCCTCGAAATTCGCATTCGCGCTCTcacctcttcctcctcctctctcCCAACCACCCGCGACGACGACGACTTGGTTAGCTTCCGCCGACCACGCCGCCGCCTCCGCCGCCGGCGACGACGACGATTTCCTGCGCCGCGAATGGCTTCGCTCCGACGAGGCGCTTTTGCCGTGGgacaaggaagaagaagaagaagcggAGCACGAGGAACAGGAAAAGGAGCagctaaagaagaagaagaagaaggttaATGCGGCGACACTGGCGGAGCAAACGCTGGACGAGGAGGAGCTGCGGCGATTGCGAACGCTGGGAATGCGTCTTAAGGAGAAGGTCACTATTCCCAAAGCTGGCCTCACGCGACCCGTGCTCCACAAGATTCACCGTCAGTGGAGGAACTGCGAGTTGGTCAGGCTCAAGTTTCACGAGTTTCTTGCTCAGAACATGAAGTTGGCTCGTCAAATTGTCGAGTGTAGAACTAGAGGGTTAGTTATATGGAGGTCAGGAAGTGTTATGTGGGTGTACCGTGGGAGGAATTACCAAGGGCTGATGCAACCGAATGAAAAGGAAGGAGATGATCGAATTACTGTGCCGGCTGATGGTGATGCAGCGTTTTTGCTGGGAAAGAGTGAGGCAGTTTTGTGGAAGGAGGAGAACATGACACCGGAGGAAGTGGAGTTCAACAGGATGCTTGATGGCTTTGGTCCTCGTTTTGTTGAATGGTGGGGTACCGGAATACTTCCTGTTGATGCTGATTTGCTTCCCCCTACGGTTCCTGGTTACAAGACACCTCTTAGGCTTCTTCCTGCTGGAATGTGTCCACAACTGACCAATGATGAACTCACGAATATGCGGAAGCTTGCTAAATCTCTTCCTTGTCACTTTGCCTTGGGGAGAAATAGAAATCTTCAAGGTCTGGCATCTGCTATTCTCAGGCTTTGGGAGAAAAGTTTAGTTGCAAAGATTGCTGTCAAGCGTGGCATTGTGAATACAAACAATGAACTAATGGCTCAGGAGCTGAAGAAATTAACAGGAGGTACCTTACTGCTAaggaataaatattacattgtaaTATATCGTGGGAAGGACTTTGTTCCAACCAGTGTGGCTGCTGTTATTGCTGAAAGACAGGAATTGACAAAACAGGTGCAGGATGTTAAGGAGAAGGTGCGGTGCAAAGCTCTCGATGTAGCTCCATCGGGGACAGATGAATCAACAGTACAAGCAGGATCATTAGCAGAGTTCTACGAGGCTCAGGCATGCTGGGGCAGGGATATATCTACTGAAGATCGTGAGAGGATGATGCAAGAGGTTGCCAAAGCCAAGAATGCTAAGcttgtcaaaaaattaaatGCCCAGGCCAGAAGGCTTAGAGCAGAAAAGCTATTAGCTAAAATAGAAGCGACCTTGGTTCCAGTTGGTCCTGATTATGACAAGGAAACAATCACAGATGAAGAACGTGTTATGTTCCGTTCAGTTGGTTTAAGAATGAAGGCATACTTGCCACTTGGTATACGCGGTGTTTTTGCTGGTGTCATTGAGAGTATGCATTTGCATTGGAGACATCGAGAACttgttaaattaataacaagaCAAAAGACCCTTGCTTTTGTTGAAGACACAGCAAGGTTACTGGAATACGAGAGTGGTGGAATACTAGTAGCAATAGATAAAGCTCCTAAaggattttttcttatttactaTCGTGGAAAGAATTATAGGCGACCTATGACTCTGAGGCCTAGAAACCTTCTAACGAAGGCAAAGGCATTGCAGCGTTCAATAGCCATGCAACAACAAGagGCTCTGAGTCAGCATATAACTGAACTGgggataaaaatagaagaaatgaaaaaagaactTGGTTTGTCTCAAGATTTGGGGCCTGAAGATAGGTGGAATGTAGAGGACCACAACCAAATAGACCATATATCAGAATCCACCCAAAGTGAGGATGAACACTCTGATGGAGACAAGTCAGATGACAATGATGGTGATTTCAGAGACGAGGAATACAGTGATTGCAATGACGAGTATTCtgaattttaa 2139 0.4367 MRLSITPALLSSLPLASPSSSKFRFKFNNSSSKFAFALSPLPPPLSQPPATTTTWLASADHAAASAAGDDDDFLRREWLRSDEALLPWDKEEEEEAEHEEQEKEQLKKKKKKVNAATLAEQTLDEEELRRLRTLGMRLKEKVTIPKAGLTRPVLHKIHRQWRNCELVRLKFHEFLAQNMKLARQIVECRTRGLVIWRSGSVMWVYRGRNYQGLMQPNEKEGDDRITVPADGDAAFLLGKSEAVLWKEENMTPEEVEFNRMLDGFGPRFVEWWGTGILPVDADLLPPTVPGYKTPLRLLPAGMCPQLTNDELTNMRKLAKSLPCHFALGRNRNLQGLASAILRLWEKSLVAKIAVKRGIVNTNNELMAQELKKLTGGTLLLRNKYYIVIYRGKDFVPTSVAAVIAERQELTKQVQDVKEKVRCKALDVAPSGTDESTVQAGSLAEFYEAQACWGRDISTEDRERMMQEVAKAKNAKLVKKLNAQARRLRAEKLLAKIEATLVPVGPDYDKETITDEERVMFRSVGLRMKAYLPLGIRGVFAGVIESMHLHWRHRELVKLITRQKTLAFVEDTARLLEYESGGILVAIDKAPKGFFLIYYRGKNYRRPMTLRPRNLLTKAKALQRSIAMQQQEALSQHITELGIKIEEMKKELGLSQDLGPEDRWNVEDHNQIDHISESTQSEDEHSDGDKSDDNDGDFRDEEYSDCNDEYSEF 712
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g3362 712 PANTHER CRS1 / YHBY (CRM) DOMAIN-CONTAINING PROTEIN 66 706 IPR045278 GO:0000375|GO:0003729
Ssu5g3362 712 SUPERFAMILY YhbY-like 305 397 IPR035920 -
Ssu5g3362 712 Coils Coil 89 119 - -
Ssu5g3362 712 Coils Coil 399 419 - -
Ssu5g3362 712 SUPERFAMILY YhbY-like 122 214 IPR035920 -
Ssu5g3362 712 ProSiteProfiles CRM domain profile. 304 401 IPR001890 GO:0003723
Ssu5g3362 712 ProSiteProfiles CRM domain profile. 121 217 IPR001890 GO:0003723
Ssu5g3362 712 MobiDBLite consensus disorder prediction 693 712 - -
Ssu5g3362 712 MobiDBLite consensus disorder prediction 655 712 - -
Ssu5g3362 712 Pfam CRS1 / YhbY (CRM) domain 306 390 IPR001890 GO:0003723
Ssu5g3362 712 Pfam CRS1 / YhbY (CRM) domain 123 206 IPR001890 GO:0003723
Ssu5g3362 712 Pfam CRS1 / YhbY (CRM) domain 513 588 IPR001890 GO:0003723
Ssu5g3362 712 SMART CRS1_YhbY_2 512 599 IPR001890 GO:0003723
Ssu5g3362 712 SMART CRS1_YhbY_2 306 390 IPR001890 GO:0003723
Ssu5g3362 712 SMART CRS1_YhbY_2 123 206 IPR001890 GO:0003723
Ssu5g3362 712 SUPERFAMILY YhbY-like 511 609 IPR035920 -
Ssu5g3362 712 ProSiteProfiles CRM domain profile. 510 610 IPR001890 GO:0003723
Ssu5g3362 712 Gene3D - 122 223 IPR035920 -
Ssu5g3362 712 Gene3D - 305 398 IPR035920 -
Ssu5g3362 712 Gene3D - 511 611 IPR035920 -
Ssu5g3362 712 MobiDBLite consensus disorder prediction 100 115 - -
Ssu5g3362 712 MobiDBLite consensus disorder prediction 655 692 - -
Ssu5g3362 712 Coils Coil 470 497 - -
Ssu5g3362 712 MobiDBLite consensus disorder prediction 89 115 - -
Ssu5g3362 712 PANTHER (CRM) DOMAIN PROTEIN, PUTATIVE-RELATED 66 706 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g3362 Ssu-Chr5 83568286 83574188 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g3362 - - gmx:100776626 988.793
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu5g3362 5 83568286 83574188 Ssu5g3362 5 83568286 83574188 ECH
Ssu5g3362 5 83568286 83574188 Ssu5g3362 5 83568286 83574188 PCT