Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g3361 ATGGCCGGAAAACAGCTCGGCGGCGAGGGCTTATCGGCGAACCTCGCCGGAATGTCGAAGAACCAGCTCTACGATATCATGTCTCAGATGAAGAGTCTGATCGAACAGAACCAGCAACAGGCCAGGCAGATCCTCATCCAAAACCCTATGTTAACCAAAGCGCTTTTCCAGGCACAAATTATGCTTGGAATGGTGCAACCACCTCAAGTGGTTCCAAAAGTGCAGCCAATGGTTTCGCAGAACAATCAGCAGTCAGTACAACCAACACAGCAACCAAATATTCAGCCTGCTCCATTATTGCCTGGGCACAGTGGTGCACAGGATCAAGCAGGTGTATCTCAAACCCAGATTCCACTGAGGAAACACCAGAACCAACCTTCAGTGCCAGTTTCATCTGCTGTTCCTGCAATGAGTCATCAATCTCAGCCCATGGCTGCACATTCTTTGCCAATGCCACAGCAGCCTAAAGGACATCTGGCTCCCCAAGTGGCTCCAGCGTCTCTTCCACAATCATCACAACTTCCAAACATACCTCTGCCTTCTCTTCATTCATCATCACAACCTCTTCATCCAACTCAAATGCCAACTGCTTCCAGTCAGTTACAGCAACCATTGCAGACACCTGGATTTCCTCATATGCCTCTGCAACTACCACTGCCTCCACAGATCAGACCACCTGCAGTGCCAACCTTCCATCCCCAGTATCCCCTACAAATGGGTTCAAACTTAGGTTTTCAACATGCTGGTGCTTCTCACAATCTTCCACAATCCATGTTTCATCCAGGTACAAAACCTCCTGTTAGTGTTGGATCCACGTTCCCACAGGGGCAGACACCACTTCCAAGTCAACAATCATCTCAGCCACCTTATCAGGTTGGGAATATGCCTTTAGGACCCGATTTTGGCAATCAAGCTGGAAATGCAATGCAAGTAGACAGAGGGTCTTCTTGGATGCCTGGTCCCTCAGAAAACCTAGCACATCTTTCTGGTCCTCCTGGACCACCATCTATAGTTTCTGGTCAGATGGGTGCTGCTAATCAGCCTCTACGGCCTCCTGcgTTGACACCAGAGATGGAGAAGGCACTGCTTCAACAGGTCATGAGCCTCACACCGGAGCAGATAAATCTCCTGCCTCCAGAACAAAGAAATCAAGTGCTGCAGCTACAACAGATGTTACGTCAATGA 1185 0.4903 MAGKQLGGEGLSANLAGMSKNQLYDIMSQMKSLIEQNQQQARQILIQNPMLTKALFQAQIMLGMVQPPQVVPKVQPMVSQNNQQSVQPTQQPNIQPAPLLPGHSGAQDQAGVSQTQIPLRKHQNQPSVPVSSAVPAMSHQSQPMAAHSLPMPQQPKGHLAPQVAPASLPQSSQLPNIPLPSLHSSSQPLHPTQMPTASSQLQQPLQTPGFPHMPLQLPLPPQIRPPAVPTFHPQYPLQMGSNLGFQHAGASHNLPQSMFHPGTKPPVSVGSTFPQGQTPLPSQQSSQPPYQVGNMPLGPDFGNQAGNAMQVDRGSSWMPGPSENLAHLSGPPGPPSIVSGQMGAANQPLRPPALTPEMEKALLQQVMSLTPEQINLLPPEQRNQVLQLQQMLRQ 394
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g3361 394 MobiDBLite consensus disorder prediction 78 206 - -
Ssu5g3361 394 MobiDBLite consensus disorder prediction 268 292 - -
Ssu5g3361 394 Pfam Transcription termination and cleavage factor C-terminal 360 394 IPR026896 GO:0031124
Ssu5g3361 394 MobiDBLite consensus disorder prediction 165 206 - -
Ssu5g3361 394 MobiDBLite consensus disorder prediction 107 148 - -
Ssu5g3361 394 MobiDBLite consensus disorder prediction 243 258 - -
Ssu5g3361 394 Pfam Hinge domain of cleavage stimulation factor subunit 2 11 69 IPR025742 -
Ssu5g3361 394 Gene3D - 355 394 IPR038192 -
Ssu5g3361 394 MobiDBLite consensus disorder prediction 243 340 - -
Ssu5g3361 394 Gene3D - 5 74 - -
Ssu5g3361 394 PANTHER HYDROXYPROLINE-RICH GLYCOPROTEIN FAMILY PROTEIN 1 394 - -
Ssu5g3361 394 MobiDBLite consensus disorder prediction 78 97 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g3361 Ssu-Chr5 83551944 83555623 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g3361 - - gmx:548018 630.172
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu5g3361 5 83551944 83555623 Ssu5g3361 5 83551944 83555623 ECH