Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g3359 ATGCTGATATGTCCCAAAGAAGAAGCACTTGTTAAACTCTTCTACAATGTCTCAAGCCCTTTTCAGCTTCTCTTCCTTATTCTCTGCTTCTCTGCCATTTTCCTTGTCACCTTCTTAACCTTCACCGGCAGATACCCCTTAATCCAGAGGGATCAAGAATATGAGTATGTCTATACCgaggatgaagaagaagaagaagaagaagaagaagaagaaactcaAGAAGGGTATTCTTGTGTTGATTCTACTAAGAGGTTAGAAATCACTTGCGGCAAGGAAACTCGTGTGTTTCTGCACAATAAGGGGCCTCAGAGGACTCATTCTTACTCGGAAGAATTCATAAGCCCCGAGGAGAGCTTGAATGAAGAGTCAGAAGAGAAGCACTATTCTGAAACGTTTTCTCTCCATAACTCACCACAAGTTTCTGACTTCGAAAATGAAGAGGCACAAACGGTTGATCAAGACTTTCCAGCAAGAGATGCCGATTCTGTTCCAAATTCTGCCCAAGTTGAAAGCAGGACCACCTCTCCCATCAACCTCAACGcatacaaaagaaacaaaaaccgcGACGACGATCATGTTAGcgttgaaattattaaaaataagaaggtgCAAGAGGCAAACCTGGCGAGGGATGAGAGATTCTTTGTTTTTGCTTCTACCCAGTTGCAGAGCAAGAAGTTAATGGTTGAAGAGAAGGATGATGAGTCCTCTACATGGAGGAGCTCCATCAATGGCAGGGATTCCGAGACTGAAGACGCGTTTTCTTCCTCATCTAGAAGAAGTTGCCCCAAGTGGGAATCATACACATTGTTCCAAAAATATGATGAAGAAATGGCAATCTTAGACAGAATTAGTGCACAGAAACTTCATGAAACTGAGTCATTAAGGTCCATCCAAATGTCTCCAAGATCAATGTCAGAGCGTATTGTGTACAAGTTTCAAACTACAAATAAAAGGCGCGCTGATGTTGGTCACAACCCATATCATGAACTAGAGGCTGCATATGTTGCACAAATTTGCTTAACATGGGAGGCCCTTAGTTGGAACTACAAAAATTTTCGTTCCAAACATGCCTCACACCAGGATCATGATACCGGTTGTTCTGCCACCATAGCGCAGCAATTCCAGCAATTTCAGGTTTTATTACGGAGATACATTGAGAATGAGCCATACGAGCATGGCAGGAGACCTGAGATCTATGCTAGAATGAGGCTTTTGGCACCAAAATTGCTCCTAGTGCCAGAATATCAAGATTTAGAGGAGGATCCGAAGGATGGTGGTTTTCAATGCAAAATATCATCAGCTTCATTTCTAAAGATAATGGAGGACGGGATCAAAACATTCATGAATTTTCTAAAGAATGACAGAGAGAAACCCTGTCAGATCCTTGCAGCCTACTTTAGGAGAAACCAGAGAGGCACAGTTGATCCAACACTACTCCGACTAATGAAGAAGAAGAGGGTGAAGGTTAAGGATCTTAGCCATTCAGGCAAATGCTTGAGGAAGAGAATGTTAAAGGTGGAAATGGATATGGATGTTTTGATGGCTCTCATAGACCTAAAAGTGGTGTCAAGGGTTTTAAGAATGAATGACTTGAGTGAAGAGCAGTTGCACTGGTGTGAGGAGAAGATGAGTAAAGTGAGAATCATGGAAGGGAAACTTCAAAGAGATTATTCCACCCCACTTTTCTTCCCCTCACATTGA 1707 0.403 MLICPKEEALVKLFYNVSSPFQLLFLILCFSAIFLVTFLTFTGRYPLIQRDQEYEYVYTEDEEEEEEEEEEETQEGYSCVDSTKRLEITCGKETRVFLHNKGPQRTHSYSEEFISPEESLNEESEEKHYSETFSLHNSPQVSDFENEEAQTVDQDFPARDADSVPNSAQVESRTTSPINLNAYKRNKNRDDDHVSVEIIKNKKVQEANLARDERFFVFASTQLQSKKLMVEEKDDESSTWRSSINGRDSETEDAFSSSSRRSCPKWESYTLFQKYDEEMAILDRISAQKLHETESLRSIQMSPRSMSERIVYKFQTTNKRRADVGHNPYHELEAAYVAQICLTWEALSWNYKNFRSKHASHQDHDTGCSATIAQQFQQFQVLLRRYIENEPYEHGRRPEIYARMRLLAPKLLLVPEYQDLEEDPKDGGFQCKISSASFLKIMEDGIKTFMNFLKNDREKPCQILAAYFRRNQRGTVDPTLLRLMKKKRVKVKDLSHSGKCLRKRMLKVEMDMDVLMALIDLKVVSRVLRMNDLSEEQLHWCEEKMSKVRIMEGKLQRDYSTPLFFPSH 568
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g3359 568 PANTHER DNA LIGASE (DUF1666)-RELATED 3 568 - -
Ssu5g3359 568 MobiDBLite consensus disorder prediction 107 127 - -
Ssu5g3359 568 Pfam Protein of unknown function (DUF1666) 331 566 IPR012870 -
Ssu5g3359 568 MobiDBLite consensus disorder prediction 242 261 - -
Ssu5g3359 568 MobiDBLite consensus disorder prediction 59 78 - -
Ssu5g3359 568 MobiDBLite consensus disorder prediction 230 261 - -
Ssu5g3359 568 PANTHER DUF1666 FAMILY PROTEIN 3 568 - -
Ssu5g3359 568 MobiDBLite consensus disorder prediction 59 76 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g3359 Ssu-Chr5 83521297 83524607 Dispersed/Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g3359 - - gmx:100776190 973.385
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu5g3359 5 83521297 83524607 Ssu5g3359 5 83521297 83524607 ECH
Ssu5g3359 5 83521297 83524607 Ssu5g3359 5 83521297 83524607 PCT