Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g3350 ATGGCTCCGAAATTGGCGAAATCGGGGTCGTTCCGTTACGGTTTCGCGGAGAAGCTTCTCTCGGTGAAGAGTAGTGCCGAAATTGGTACGCAAGAGGAAGAGCAATCGAGGATGGTGAAGTGGTGGAACACGGTTAAGCGCGTGGCTGGGAAGGCATGGGAAATGGGTCGCTCTGATCCCAGGAAGATTATCTTCCCCGCAAAATTGGGCCTTGCTTTGGCACTTATTTCCCTTTTGCTTTTCCTCAAAGAACCCTTCAAGGATATGAGCCGCTACTGTGTCTGGGCCATTCTAACTGTTGTCGTAGTCTTTGAATTCAGCATAGGGGCAACTCTGAGCAAGGGGTTAAACAATGGATTGGGGACCTTGTCGGCTGGAGGACTTGCTCTGGGGATGGCAGAGTTATCAGCATTGGGTGGACAATGGGAggaacttataattattataagcatCTTCATTGTAGGATTTTGTGCCACCTATACAAAACTATACCCTACCTTGAAGCCTTATGAATTCGGATTCCGAGTGTTCTTGATCACATATTGTTTCGTTACTGTATCCGGGTATCAGACAGGGGAATTTGTCAATACAGTTATAAATAGGTTTTTTCTCATTGCACTTGGTGCTGCTGTATCTTTGGGAGTAAATATCTGTATATACCCAATCTGGGCTGGTGAGGATCTGCATAATCTTGTGACAAAAAATTTCATGGGTGTTGCAACATCTTTGGAAGgTGTTGTCAATCACTACCTTCATTGTGTTGAATATAAGAAGGTGCCATCTAAAATTCTTACTTTCCAAGCTTCTGATGACCCAGTTTACAATGGCTACAGATCGGTTGTTGAATCTACAAGTAAAGAAGATTCATTGATGGGATTTGCTATTTGGGAACCACCACATGGTCCATACAAAATGCTTAAATATCCATGGAagaattatgtgaaattaagTGGGGCTCTAAGGCATTGCGCATTTATGGTCATGGCTATGCATGGATGCATACTTTCTGAAATACAGGCCCCAGCCGAGATGAGACAAGTTTTCCGCAGGGAACTTCAGAGGGTAGGTTCTGAAGGGGCAAAAGTGTTGCGTGAACTTGGAAACAAAGTTAAAAAGATGGAGAAATTAGATGGGGGAGACTTGCTGTATGAAGTGCACGAGGCCGCAGAGGAATTGCAACAGAAGATTGATAAAAAATCTTACCTTCTTGTGAATTCAGAGAGCTGGGAAATTGGAAACCGCTcaagagaagaagaggagagTGATCCTCAACAAGGCCTCTTAAACatggaggaagaaagaaaatttcTGGAGTACAAGTCTCATAGTGAAGCAGTACTTGATCTCAGAACAGTTGAAGTTCCAAATACTTGGGAAGGAATTTCAGCTCTAGGCAATAACCCTGCTGTGCCTGCAACCGATGCCTCTCAAAACATGTTCAGGAAACAGATATCTTGGCCTGCTCATATTTACCATAAATCAAATGCCGTGGCCAAAGAGGGTCAAGAATCAAAAACTTACGAAAGTGCTAGTGCACTGTCTCTAACAACATTTACATCGCTTCTCATTGAATTTGTAGCAAGGCTTCAAAACCTGGTGGATTCGTTTGAAGAATTAGGTGAAATAGCAAACTTTGGTGACCCCCTGGAGCAACAAGCACCAGTAGCATCTCGTGGGTTTTGGACCAGGTTGTTTAACTGCTTGAAATTCAAGGACTGA 1719 0.4188 MAPKLAKSGSFRYGFAEKLLSVKSSAEIGTQEEEQSRMVKWWNTVKRVAGKAWEMGRSDPRKIIFPAKLGLALALISLLLFLKEPFKDMSRYCVWAILTVVVVFEFSIGATLSKGLNNGLGTLSAGGLALGMAELSALGGQWEELIIIISIFIVGFCATYTKLYPTLKPYEFGFRVFLITYCFVTVSGYQTGEFVNTVINRFFLIALGAAVSLGVNICIYPIWAGEDLHNLVTKNFMGVATSLEGVVNHYLHCVEYKKVPSKILTFQASDDPVYNGYRSVVESTSKEDSLMGFAIWEPPHGPYKMLKYPWKNYVKLSGALRHCAFMVMAMHGCILSEIQAPAEMRQVFRRELQRVGSEGAKVLRELGNKVKKMEKLDGGDLLYEVHEAAEELQQKIDKKSYLLVNSESWEIGNRSREEEESDPQQGLLNMEEERKFLEYKSHSEAVLDLRTVEVPNTWEGISALGNNPAVPATDASQNMFRKQISWPAHIYHKSNAVAKEGQESKTYESASALSLTTFTSLLIEFVARLQNLVDSFEELGEIANFGDPLEQQAPVASRGFWTRLFNCLKFKD 572
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g3350 572 Pfam Aluminium activated malate transporter 53 540 IPR020966 GO:0015743
Ssu5g3350 572 PANTHER ALUMINUM ACTIVATED MALATE TRANSPORTER FAMILY PROTEIN 1 571 - -
Ssu5g3350 572 PANTHER ALUMINUM-ACTIVATED MALATE TRANSPORTER 10 1 571 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g3350 Ssu-Chr5 83270686 83277589 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu5g3350 6 548 Miscellaneous Gene Families AT3G18440 60.580 0.0 677
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g3350 - - gmx:100777792 914.45
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu5g3350 5 83270686 83277589 Ssu5g3350 5 83270686 83277589 ECH
Ssu5g3350 5 83270686 83277589 Ssu5g3350 5 83270686 83277589 PCT