Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g3347 ATGTCTCGAATCTTCGAGTACTTCGTGGTGTGCGGGATCGGACCAGAGATTCGAACCATGGACGGAAACAAAGGCTACCATGGCCCTGGTTGCATGTATCTTCCTTCTCTTCTCGACCAGTATCCTCCTCCCAATCACTCTCTCTACCCTCCTCCGCCGCCACAGCTTTCCACATGTGTTTTACCGGCCGGTGTTGAATTCTATTCGTCAGGATTTGATTCGAATGATCCTTCCTCGTTTCCGCGGAGCTATCCGATTGTTTTGACTGAGGGTGACGGATCAAAAATCTATGTCAGTTGCATTTCTTTCCGGGATCCAGTTTGTGAGGATATTGCAGAGGCATACCGGATACAGGCAAATTCATATGCTGACAAATGCATCTGTCTGGTTTCACGCTTGCCCAGTTTCCGCGTACTAAGAAGTGCTCTGGAGGAAATATTTGCTCTGTGTTTTTCCCCAAATGGAAGTAGCAAGCCACTATGGGATGTTATAGCACATATGGTGTCCAGTGTGCCTTTGCCAACTCCTGGAAAGGAGCGAGTTCTGTTTGCTATTGAGAGTTGTCTGCTTTCTGTAGAGGCTCCACCTAACAATGGGCTTCCCCATGTTGATATATCATTTCAGCCTCTGGTGCAGTGCTTGGATGTTGACAACTTGGTGAGACTTTTTACAGCAGTGTTGCTTGAGAGAAGGATTTTACTTCGAGctaacaaGTATTCACTTCTAACTCTTGTATCAGAGGCCATTTGCCACCTAATCTACCCATTCCGATGGCAGCATGTATACATTCCGTTGCTGTTTTTCAGTGGAGTAGATTATATTGATGCTCCTACACCATATATGATGGGGCTCCATTCGGGTGTTGATACTTCTGCTCTGGCAATGGATGGGGTTGTTGTTGTGGACCTTGAGTATAATCGTATCACTACGTCAGAGGAAATTCCTCCTATTCCTGAGCCAGAATTCAGCTTTTTGCGTGGTGAGATAATGAAGCTATTATATCCCAATGTAATTGGAATTGATGAGATGAAAGCTGGAATAGGCAGTGTATCTGAGCATTATACTAAACTTAGGGCTAAGCAATGGGGAGAGGAACATGACCTTCAGCTAAGGATGATATTCCTAAGGTTCTTTGCAACAGTTTTAAGTGGCTATCGCAATTTCCTAGAAAATAGTGCTACTCATGTCTTCAACACTCAAGCTTTTTTGAAGAAGCGGTCTCGATCTACTAACCAACCACCAGAGCCCGTGATAGCTCAGTTCCTTGACTCTCATGGTTTCTTGGATTATTTGGAGAGAGGAGTAGGTTCTGATGAAAACAACAATAATCTGCTTGATAAGCTACAAGATGCAATCGGAAGGGGTCAAAACCCTATGTCAATTCTTCCTTCATCCTCAGTAGAACCTGAGATTTTAACAGTATCAGATTCTGATGTTGGAATATCAGTATCTGGTGCCAAATACACTTATGATAGATTCCCTGCAAATATCAGAAcagaagaacaagaagaaaagaggaaacAGATTCTTGCAGCAGTTAGTAATGCTTTTGAGTACTCAGGAAGACATACTCCAAGTAAGGATCCTTTAGCAGATAGTCTTAGTCCACTTGAGAGAGCTGCTGAAAGGGAGCGCATGGTGCTAGATATTAAGGTTAAGCTGCAGGGTTTATGGCTGCGGCTTCTTAAACTGGGAGCGACAGATGATCCTCTCTCATCCTTTGAATATGGAACAATACTTGCTTTGATTGAATCTGACGCAGAGGGGATTGGCGGTAGTGGATTTGTTGAATGTATAAGGGAGCATATACATTCAGGTTGGGACTGTCATCTCACTGAAGAACAGTTTATTGCAGTGAAAGAATTGCTTAAAACAGCTATCAATCGTGCAACATCACGAAATGACTTGTTGACCATTAGAGATGCTCTTGAAGTTTCTTCtgatatgtataaaaaagataataataacgTGCCGGACTATATCCAACGTCATCTTATCTCTTTATCTATTTGGGAGGAATTACGATTTTGGGAAGGatattttgactatttaatGGAGCAATCTTCAATCAAGTCTGCCAACTATGCATCTTTGGTGACAGCTCAGCTTGTTGTGTTGGCATCACACATGGCTGGGCTGGGACTTCCTGATAATGATGCTTGGTACATGATTGAAACAATTGCAGAGAGGAACAGCATTGGATCCAAGCAATTTATAAAAATCAGAGGGTTCTTGTCTCATATCCAGCAATTACGTAATGGATACTGGGGAATCACCTCAATGAAGGCACAGTCTGTGTTATCACTTGCATTGCCATCCCCACATTCTAAAGATGCCAATGATGAGAACCAGCAACCCACTGAGGCAACTGGTGTTGGTAGAAGCTGGGTGCAGAGTATGTTCAGCCGAAATACAACAACTAGATCCAGCTCATTTAGTCGTGTTCGTAGATGGACGTCTGATGGAGGCAACTCAGCTACAAATGAAAATGGGACTCCTCGCAAACAAGATCTGTCAAGTGGTGGTCAGAAAAAGCTTCAAACCAATGTTCGCATACTTAGGGGTCATAATGGTGCCATTACTGCTCTCCATTGTGTTACAAAAAGAGAAGTGTGGGATTTGGTGGGTGACCGTGAAGATGCTGGTTTCTTTATTAGTGGAAGCACAGACTGCTCTGTTAAGATCTGGGATCCTAGTCTTCGTGGTTCTGAAATCAGGGCAACTTTAAAAGGGCATACTAGAACTGTCCGCACCATAAGTTCAGATAGGGGGAAGGTGGTGTCAGGATCTGATGATCAGTCTGTTTTGGTGTGGGATAAGCAAACAACTCAACTTCTTGAAGAGCTTAAGGGCCATGATGGACcgGTCAGCTGTGTGCGCATGCTCTCAGGTGAACGTGTGTTAACTGCATCCCATGATGGCACTGTGAAGATGTGGGATGTAAGAACTGATAGATGTGTTGCAACTGTTGGTCGTTGCTCTAGTGCTGTTTTATGCATGGAATATGATGACAATGTGGGAGTCTTGGCTGCTGCCGGAAGAGacttAGTTGCCAACATATGGGATATCCGTGCTAGTAGGCAGATGCATAAACTTTCAGGACATACACAATGGATACGGTCCATAAGAATGGTTGGTGACACTGTGATTACTGGTAGTGATGATTGGACGGCAAGAATATGGTCTGTTTCCCGAGGAACATGTGATGCTGTCCTAGCATGCCATGCAGGGCCAATATTATGTGTTGAATATTCTTCTTTAGACAGAGGAATAATTACAGGGTCCACTGATGGCCTGCTACGTTTTTGGGAAAATGATGATGGAGGTATAAGGTGTGCAAAAAATGTAACAATTCACAATGCTGCCATATTATCTATCAATGCTGGGGAGCACTGGTTAGGCATTGGAGCAGCTGATAATTCTCTGTCTCTCTTTCACCGGCCCCAAGAAAGACTTGGTAGTTTCTCTGGCTCTGGGTCCAAGATGGCTGGTTGGCAGCTTTACAGAACACCACAGAAAACAGTTGCTATGGTAAGATGTGTTGCTTCAGACTTGGAAAGGAAAAGGATATGCAGCGGTGGTCGCAATGGGCTCCTAAGGCTGTGGGATGCAACCATTAATATTTGA 3627 0.4312 MSRIFEYFVVCGIGPEIRTMDGNKGYHGPGCMYLPSLLDQYPPPNHSLYPPPPPQLSTCVLPAGVEFYSSGFDSNDPSSFPRSYPIVLTEGDGSKIYVSCISFRDPVCEDIAEAYRIQANSYADKCICLVSRLPSFRVLRSALEEIFALCFSPNGSSKPLWDVIAHMVSSVPLPTPGKERVLFAIESCLLSVEAPPNNGLPHVDISFQPLVQCLDVDNLVRLFTAVLLERRILLRANKYSLLTLVSEAICHLIYPFRWQHVYIPLLFFSGVDYIDAPTPYMMGLHSGVDTSALAMDGVVVVDLEYNRITTSEEIPPIPEPEFSFLRGEIMKLLYPNVIGIDEMKAGIGSVSEHYTKLRAKQWGEEHDLQLRMIFLRFFATVLSGYRNFLENSATHVFNTQAFLKKRSRSTNQPPEPVIAQFLDSHGFLDYLERGVGSDENNNNLLDKLQDAIGRGQNPMSILPSSSVEPEILTVSDSDVGISVSGAKYTYDRFPANIRTEEQEEKRKQILAAVSNAFEYSGRHTPSKDPLADSLSPLERAAERERMVLDIKVKLQGLWLRLLKLGATDDPLSSFEYGTILALIESDAEGIGGSGFVECIREHIHSGWDCHLTEEQFIAVKELLKTAINRATSRNDLLTIRDALEVSSDMYKKDNNNVPDYIQRHLISLSIWEELRFWEGYFDYLMEQSSIKSANYASLVTAQLVVLASHMAGLGLPDNDAWYMIETIAERNSIGSKQFIKIRGFLSHIQQLRNGYWGITSMKAQSVLSLALPSPHSKDANDENQQPTEATGVGRSWVQSMFSRNTTTRSSSFSRVRRWTSDGGNSATNENGTPRKQDLSSGGQKKLQTNVRILRGHNGAITALHCVTKREVWDLVGDREDAGFFISGSTDCSVKIWDPSLRGSEIRATLKGHTRTVRTISSDRGKVVSGSDDQSVLVWDKQTTQLLEELKGHDGPVSCVRMLSGERVLTASHDGTVKMWDVRTDRCVATVGRCSSAVLCMEYDDNVGVLAAAGRDLVANIWDIRASRQMHKLSGHTQWIRSIRMVGDTVITGSDDWTARIWSVSRGTCDAVLACHAGPILCVEYSSLDRGIITGSTDGLLRFWENDDGGIRCAKNVTIHNAAILSINAGEHWLGIGAADNSLSLFHRPQERLGSFSGSGSKMAGWQLYRTPQKTVAMVRCVASDLERKRICSGGRNGLLRLWDATINI 1208
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g3347 1208 PANTHER DENN DOMAIN-CONTAINING PROTEIN 3 3 1208 - -
Ssu5g3347 1208 ProSiteProfiles Trp-Asp (WD) repeats profile. 909 948 IPR001680 GO:0005515
Ssu5g3347 1208 Gene3D - 202 387 IPR043153 -
Ssu5g3347 1208 ProSiteProfiles Trp-Asp (WD) repeats profile. 949 989 IPR001680 GO:0005515
Ssu5g3347 1208 ProSitePatterns Trp-Asp (WD) repeats signature. 1190 1204 IPR019775 -
Ssu5g3347 1208 PRINTS G protein beta WD-40 repeat signature 926 940 IPR020472 -
Ssu5g3347 1208 PRINTS G protein beta WD-40 repeat signature 1049 1063 IPR020472 -
Ssu5g3347 1208 PRINTS G protein beta WD-40 repeat signature 967 981 IPR020472 -
Ssu5g3347 1208 SMART dDENN_cls 366 434 IPR005112 -
Ssu5g3347 1208 SUPERFAMILY WD40 repeat-like 850 1204 IPR036322 GO:0005515
Ssu5g3347 1208 Pfam WD domain, G-beta repeat 1067 1103 IPR001680 GO:0005515
Ssu5g3347 1208 Pfam WD domain, G-beta repeat 907 939 IPR001680 GO:0005515
Ssu5g3347 1208 Pfam WD domain, G-beta repeat 1028 1062 IPR001680 GO:0005515
Ssu5g3347 1208 Pfam WD domain, G-beta repeat 848 897 IPR001680 GO:0005515
Ssu5g3347 1208 Pfam WD domain, G-beta repeat 944 980 IPR001680 GO:0005515
Ssu5g3347 1208 MobiDBLite consensus disorder prediction 772 844 - -
Ssu5g3347 1208 PANTHER C-MYC PROMOTER BINDING PROTEIN 3 1208 - -
Ssu5g3347 1208 SMART DENN_cls 122 306 IPR001194 -
Ssu5g3347 1208 Gene3D - 1028 1208 IPR015943 GO:0005515
Ssu5g3347 1208 Pfam uDENN domain 35 103 IPR005113 -
Ssu5g3347 1208 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 909 939 - -
Ssu5g3347 1208 SMART uDENN_cls 1 104 IPR005113 -
Ssu5g3347 1208 CDD WD40 849 1145 - -
Ssu5g3347 1208 Gene3D - 1 176 - -
Ssu5g3347 1208 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 1072 1104 - -
Ssu5g3347 1208 ProSitePatterns Trp-Asp (WD) repeats signature. 967 981 IPR019775 -
Ssu5g3347 1208 Gene3D - 809 1027 IPR015943 GO:0005515
Ssu5g3347 1208 ProSiteProfiles Trp-Asp (WD) repeats profile. 1032 1071 IPR001680 GO:0005515
Ssu5g3347 1208 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 949 983 - -
Ssu5g3347 1208 Pfam DENN (AEX-3) domain 123 304 IPR001194 -
Ssu5g3347 1208 ProSiteProfiles Trp-Asp (WD) repeats profile. 879 897 IPR001680 GO:0005515
Ssu5g3347 1208 ProSiteProfiles Trp-Asp (WD) repeats profile. 1072 1104 IPR001680 GO:0005515
Ssu5g3347 1208 ProSiteProfiles Tripartite DENN domain profile. 18 442 IPR037516 -
Ssu5g3347 1208 SMART WD40_4 1109 1146 IPR001680 GO:0005515
Ssu5g3347 1208 SMART WD40_4 1025 1062 IPR001680 GO:0005515
Ssu5g3347 1208 SMART WD40_4 983 1022 IPR001680 GO:0005515
Ssu5g3347 1208 SMART WD40_4 1065 1104 IPR001680 GO:0005515
Ssu5g3347 1208 SMART WD40_4 1164 1203 IPR001680 GO:0005515
Ssu5g3347 1208 SMART WD40_4 846 897 IPR001680 GO:0005515
Ssu5g3347 1208 SMART WD40_4 942 980 IPR001680 GO:0005515
Ssu5g3347 1208 SMART WD40_4 902 939 IPR001680 GO:0005515
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu5g3347 886 1105 Acyl Lipid Metabolism Gene Families AT3G18860 27.273 1.86e-09 60.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g3347 - - gmx:100818305 2310.03
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu5g3347 5 83149813 83180626 Ssu5g3347 5 83149813 83180626 ECH