Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g3345 aTGAACATTTGTGGTTATTCGTTGTCATCAATGAAATTCCCCGTTTGGCGCTTCCCAAGGCCCCTTATCTCCCTCTCTTCTTCCTCGTCTCGCATTATGTCCATTCAaaattgttcttcttcttcttcctcttcagCTTCCATATCAACTTCAACGGAGTCGAAACAGAAGAAGGAATATTTACCTTGGTTAATTGTTGGCCTTGGCAATCCGGGCAAGAAGTACGCTGCCACCCGCCATAATGTGGGCTTTGAGATGGTTGATACCATTGCTGCAGCTGAAGGGATATCTATGAGCACCGTTTCCTTCAAAGCCTTATTTGGAAAAGGTTTTATAGGTGATGTACCAGTTATACTTGCAAAACCACAGACTTTTATGAATTCAAGTGGTGAATCTGTTGGGGCCATAGTTTCATATTACAAGATTCCTCTCAAGCAAGTACTTGTGATCTTTGACGACTTGGATTTGCCTTTTGCTAAATTGCGGCTTCTACCAAAGGGTGGACATGGAGGTCACAAtggAATGAAGAGTGTTATTAATCACTTCAAAGGGAATGTTGGTTTTCCCCGTTTAAGAATTGGCATTGGACGACCTCCCGGGAAAATGGATCCTGTAGCATTTGTTCTTCGCCTGTTCACTAAACAGGAAAGGGAAGAGGATCATATAGCAAGGAGATACAACTTAAAAAGGGTAAACTCGTTCAAGGCTCTGTTTTTAATTCGATAG 726 0.405 MNICGYSLSSMKFPVWRFPRPLISLSSSSSRIMSIQNCSSSSSSSASISTSTESKQKKEYLPWLIVGLGNPGKKYAATRHNVGFEMVDTIAAAEGISMSTVSFKALFGKGFIGDVPVILAKPQTFMNSSGESVGAIVSYYKIPLKQVLVIFDDLDLPFAKLRLLPKGGHGGHNGMKSVINHFKGNVGFPRLRIGIGRPPGKMDPVAFVLRLFTKQEREEDHIARRYNLKRVNSFKALFLIR 241
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g3345 241 TIGRFAM pth: aminoacyl-tRNA hydrolase 64 219 IPR001328 GO:0004045
Ssu5g3345 241 Pfam Peptidyl-tRNA hydrolase 64 219 IPR001328 GO:0004045
Ssu5g3345 241 ProSitePatterns Peptidyl-tRNA hydrolase signature 2. 168 178 IPR018171 GO:0004045
Ssu5g3345 241 Gene3D - 47 234 IPR036416 GO:0004045
Ssu5g3345 241 PANTHER PEPTIDYL-TRNA HYDROLASE CHLOROPLASTIC 22 229 - -
Ssu5g3345 241 Hamap Peptidyl-tRNA hydrolase [pth]. 62 240 IPR001328 GO:0004045
Ssu5g3345 241 SUPERFAMILY Peptidyl-tRNA hydrolase-like 61 219 IPR036416 GO:0004045
Ssu5g3345 241 ProSitePatterns Peptidyl-tRNA hydrolase signature 1. 75 88 IPR018171 GO:0004045
Ssu5g3345 241 PANTHER PEPTIDYL-TRNA HYDROLASE 22 229 IPR001328 GO:0004045
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g3345 Ssu-Chr5 83121407 83125897 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g3345 K01056 - gmx:100526866 340.502
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu5g3345 5 83121407 83125897 Ssu5g3345 5 83121407 83125897 ECH