Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g3343 ATGTATGGCGGTGACGAAGTATCAGCAATAGTGATAGACCTTGGGTCGCACACATGCAAAGCCGGTTACGCTGGCGAAGATGCTCCCAAGGCCGTCTTTCCCTCTGTTGTTGGTGCAATTGATCAAATGGACATTGATGGAACTGGTGATGCTGACGAGAACTCAGGGGCTGCTGTGGATTTACAAAACAATGCCAAAAATAATGATTCTGACAAAACCAAGGGAAAATGCAAACTTTACGTAGGATCTCAGTCACTAGGATACCGCAGAGACTATATGGAGGTGCTGTCACCATTGAAGAATGGAGTTGTTGTTGACTGGAATATTGTAGACAACATATGGGATCATGCTTTGAGGGAATGCCTACTAGTTGATCCTAAAGAGCGTCCAATGCTACTTGCTGAGCCATGTTCCAACACTCAAGAACAGAGAGAAAGGGCAGCAGAActtatgtttgaaaaatataaagtacCAGCATTGTTTTTGGCTAAGAATGCTGTTCTCACATCTTTTGCATCAGGGCGTGCTACCTCATTAGTTGTTGATAGTGGTGGTGGATCAACTACAGTTGTACCAGTACTTGATGGTTATGTTCTTCAAAGGCATGCttcttcattaaaaattatcactggtgGGTTAGGGGTTCAAGCTGTGATAACTTCTCCTATTGGAGGAGAATTTCTGACAGATTGCTTGATGAAAAGTTTGGGAGGCAAAGGTATCACAATAAGACCTCGGTATTCAttcaagaaaaaggaaatacgGCCTGGAAATCTTCAGACTGTAAACCTTGATTTTTCACATACAACAGAAAGCTACAAACTCTACTCCCAGAGGGTGATTGCTAGTGACATCAAGGAATGTGTTTGCCGAACACCAGATTCTCCATATGATGAGAGTGCTTATTCTAACATTCCAATGACTTCATACGAGCTTCCTGATGGCCAGATTATTGAAGTTGGATCTGACAGATTCAAGATTCCTGATATTCTTTTTAATCCATCattggttcagACAATCCCTGGCATGGAGAGTTTTGCAGCAATTGCTCCTTCAATTCGTGGTCTTCcaaaaatgATTATAGAGAGCATTAATAAATGTGATGTGGACATTCGAAGAGAACTATTTAGTACCATACTGCTTACTGGTGGTACAGCTTCAATGCAACAGTTGAAGGAACGCATTGAGAAAGACTTGCTAGAGGAGTCCCCTCAAGCTGCTAGAGTAAAAGTGTTTGCCAGTGGTAATGCAACTGAAAGAAGGTTCAGTGTTTGGATTGGGGGGAGTATATTGGCTTCGCTTGGCTCCTTCCAGCAGATGTGGTTCTCCAAGTCTGAGTACGAAGAACAAGGTGCTTCTTATATCCAAAGAAAGTGCCCTTGA 1383 0.4049 MYGGDEVSAIVIDLGSHTCKAGYAGEDAPKAVFPSVVGAIDQMDIDGTGDADENSGAAVDLQNNAKNNDSDKTKGKCKLYVGSQSLGYRRDYMEVLSPLKNGVVVDWNIVDNIWDHALRECLLVDPKERPMLLAEPCSNTQEQRERAAELMFEKYKVPALFLAKNAVLTSFASGRATSLVVDSGGGSTTVVPVLDGYVLQRHASSLKIITGGLGVQAVITSPIGGEFLTDCLMKSLGGKGITIRPRYSFKKKEIRPGNLQTVNLDFSHTTESYKLYSQRVIASDIKECVCRTPDSPYDESAYSNIPMTSYELPDGQIIEVGSDRFKIPDILFNPSLVQTIPGMESFAAIAPSIRGLPKMIIESINKCDVDIRRELFSTILLTGGTASMQQLKERIEKDLLEESPQAARVKVFASGNATERRFSVWIGGSILASLGSFQQMWFSKSEYEEQGASYIQRKCP 460
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g3343 460 CDD NBD_sugar-kinase_HSP70_actin 97 208 - -
Ssu5g3343 460 PANTHER - 2 459 - -
Ssu5g3343 460 SUPERFAMILY Actin-like ATPase domain 5 181 IPR043129 -
Ssu5g3343 460 Gene3D Actin; Chain A, domain 4 223 335 - -
Ssu5g3343 460 Gene3D - 4 192 - -
Ssu5g3343 460 Gene3D - 420 460 - -
Ssu5g3343 460 PANTHER ACTIN 2 459 IPR004000 -
Ssu5g3343 460 Gene3D - 336 419 - -
Ssu5g3343 460 Pfam Actin 4 459 IPR004000 -
Ssu5g3343 460 SMART actin_3 7 460 IPR004000 -
Ssu5g3343 460 SUPERFAMILY Actin-like ATPase domain 174 459 IPR043129 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g3343 Ssu-Chr5 83102273 83109870 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu5g3343 1 459 Miscellaneous Gene Families AT3G53750 34.416 4.47e-88 272
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g3343 K11340 - gmx:100819549 795.423
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu5g3343 5 83102273 83109870 Ssu5g3343 5 83102273 83109870 ECH