Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g3342 ATGTTGCCCAACTTTCAGTTTTTGAGGCAGATGTGTGAATCTGACTCAAGAAGACTGTTAGTTGGTAACATCCACGTACTTTACAACCCAAACAGGGGAGAAGTTAAATTAGGTCAAATTCGTTTTCTCTCATCAAGAGCACAGAACCTCTCAGAGAAATGGGGTAATACCCCTGTTGTGCTAGCTGGTGATTTTAATAGTACTCCTCAGAGTGGAATATACAAGTTCTTGTCATCATCTGAGCTTAATATCATGCTGTATGACAGAAAGGAATTATCGGGACAGAAACGCTGTCGTCCTGCTCAAGTTTTAGGCGAGAATAAAGAAACAGTTGGTCCAATTGTCACGCTAGATGGATTGTTAAAGTGCTGGACAGATGAAGAGGTAAAAATAGCAACTGGAGATTCTGAGCATCATTTGGCTGTGCATTCATTGAAGCTGAATAGTTCGTATGCCACAGTTAATGGTTCAACTAGTACACGGGGATTCAATAGTGAACCCTTGGCAACTTCCTATCACTCAAAGTTTCTTGGCACTGTAGATTACTTATGGTACTCGGATGGTATTGTCCCTACAAGAGTTCTTGACACCGTTCCAATAAGTGATCTTGTAAGGGCAGGTGGCCTCCCATGCAAGAAAGTGGGAAGCGACCATTTGGCCTTGGTTTCTGAATTTTCTTTCTCAGTTACCAACAATGAACCTACAGACATAGTGGCGGCAGCAGCATCACCTATAGTAGATATTGAAGAACCTAACAATCAGCAGTCATAA 771 0.4189 MLPNFQFLRQMCESDSRRLLVGNIHVLYNPNRGEVKLGQIRFLSSRAQNLSEKWGNTPVVLAGDFNSTPQSGIYKFLSSSELNIMLYDRKELSGQKRCRPAQVLGENKETVGPIVTLDGLLKCWTDEEVKIATGDSEHHLAVHSLKLNSSYATVNGSTSTRGFNSEPLATSYHSKFLGTVDYLWYSDGIVPTRVLDTVPISDLVRAGGLPCKKVGSDHLALVSEFSFSVTNNEPTDIVAAAASPIVDIEEPNNQQS 256
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g3342 256 Gene3D Endonuclease/exonuclease/phosphatase 4 243 IPR036691 -
Ssu5g3342 256 PANTHER CARBON CATABOLITE REPRESSOR PROTEIN 4 HOMOLOG 6 117 227 - -
Ssu5g3342 256 PANTHER CARBON CATABOLITE REPRESSOR PROTEIN 4 117 227 - -
Ssu5g3342 256 SUPERFAMILY DNase I-like 12 226 IPR036691 -
Ssu5g3342 256 Pfam Endonuclease/Exonuclease/phosphatase family 53 218 IPR005135 GO:0003824
Ssu5g3342 256 PANTHER CARBON CATABOLITE REPRESSOR PROTEIN 4 14 97 - -
Ssu5g3342 256 PANTHER CARBON CATABOLITE REPRESSOR PROTEIN 4 HOMOLOG 6 14 97 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g3342 Ssu-Chr5 83090205 83093928 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g3342 - - gmx:100779393 472.626
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu5g3342 5 83090205 83093928 Ssu5g3342 5 83090205 83093928 ECH