Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g3341 ATGCAACGTTTCGTTGACAACGTCCTCGCTGTAACTAAAGAGTCGGTGAAGACGTTTACCTATGAGTCCTTGAACAATATTGTGAGACTGATCAATGGCGTGTCAGCTCTTCTGTTGACTCTGCTACCTGGGAAAGCTACAATACTTGAAGGTATTCAGGGTTGGGAGCTCAGACCAACTTTTCGAGGACCACGGTTTCCACGTTGGATGGAAAATGGTGTGTCCTCTTTCAACCAGTTTATTCATGAGCTTTCTGTGGATTCCGATGTATCAAGCCTGGAATATTCATCTGGAGAAGAAGGCAGTGATGGATATGAAGAATATACTGAATCTCCCTCATCTCAAAGTTCTAGAGCCTCCAGAGCTAGTTTTACTGATTATGGTGGGCACCAGATGGATTGGATCCTGTATATCTTACTTTggattttggttcctatacagTTTTTGCTGGGGATTCCATTTCGTCTTTTCCAGTTAGCTTATTCTGGGGTGTCAAAACCTCGGGCTATCTCTGGCAATGAACACCCTTCACAATTACAATCACAATCACATAATAATAGAGTGCAAAGCCTCAAGGACCAAATTATCTATTGTACTACCGATAGGAGACATGGGGTCATAGAGGATCTTCATTTGGCCATGGAGATATTTATAGAAGCTGTTTTTGATGTTGTTCACAAGGCAGTACATCTTCTTCTTTCCCCATCAACAGCTTTTGGAACAATATTCAGGTTGTTTTCATCTCATGAAAGAGGCGTTGTAGATGATAATGATGTTGTCGAGGATGTCTCTACTTCTTCAGCTACACTTAGAGAGAATGACCCAACCCCTACAGAGAGGAATACCAGAGTTCGTCCGTCGCTGAACACGGATGCCCGGAAATGTCAAGATGTCATAACAGAGCTAGGGTATCCATATGAGGCTATTCATGTAACCACTACAGATGGATATGTTCTTCTTTTAGAAAGAATTCCTAgGCGAGATGCACATAAAGCTGTTTATCTTCAGCATGGAGTCTTAGACTCATCAATGGGTTGGGTATCTAATGGTGTTGTTGGCTCTCCCGCTTTTGCGGCCTATGATCAAGGGTATGATGTATTTCTGGGAAACTTTCGTGGTTTGGTTTCTAGGGAACATGTCAACAAGAACATCTCCTCTCGTGAATACTGGCAGTACTCCATCAATGAACATGGGACTGAGGATATTCCTGCTATGATAGAGAAAATCCATCAAGTAAAAACTGCTGAATTGAGGCTTAATAAGCCTGATATTGAGGAGGAAAGTGATGGTGATCAGCTTTACAAGCTTTGTGCAATTTGCCATAGTATGGGAGGAGCTTCTATGTTAATGTATGTCGTTATGCGAAGGATTGAAGCGAGGCCCCATAGACTTTCAAGATTGGTCTTGTTATCACCTGCTGGTTTTCATCATGACTCTAACCTAGTCTTTTCTGTGGTGGAGCATGTATTATTTTTGCTGGCCCCTGTCTTGTCATGTATTTTCCCAGCCTTCTATATACCAACCAGGTTTTTTCGTATGCTTGTTCACAAGTTAGCTCGGGACCTGCAAAACCTACCTGCAGTTGGAGGATTGGTTCAAACTTTAGTAGGTTATGTTGTTGGTGGGGACAGCTCAAATTGGGTTGGAGTTTTAGGATTACCACATTACAACATAAATGACATGCCAGGAGTATCTTTTGGTGTTGCTCTGCATCTTGCACAGATAAAGCGTGCTAGAAGATTTAGAATGTTCGATTATGGGAGTGCAGCTGCTAATATGGAAGTGTATGGCTCCCCTGAGCCTTTGGATTTGGGTGAACACTACGGGCTCATCAACATTCCTGTTGATCTGGTTGCTGGTCAGAAAGACACAGTGATTCGATCTTCAATGGTAAAGAGACACTATAAATTGATGAAGGATGCAGGTGTGGATGTGTCATATAATGAGTTTGAATATGCTCATTTGGACTTTATCTTCTCTCACCGTGAAGAACTTTTGTCATGTGTTATGTCACGTTTGTTGCTTGTGGAGCCCAATTCAAAGAATCAAGTAAATCAAAGGGCTGTAAGATCGAGGAAAAAGGGACAGGTTTCGGTTAGTGGGTAG 2106 0.4183 MQRFVDNVLAVTKESVKTFTYESLNNIVRLINGVSALLLTLLPGKATILEGIQGWELRPTFRGPRFPRWMENGVSSFNQFIHELSVDSDVSSLEYSSGEEGSDGYEEYTESPSSQSSRASRASFTDYGGHQMDWILYILLWILVPIQFLLGIPFRLFQLAYSGVSKPRAISGNEHPSQLQSQSHNNRVQSLKDQIIYCTTDRRHGVIEDLHLAMEIFIEAVFDVVHKAVHLLLSPSTAFGTIFRLFSSHERGVVDDNDVVEDVSTSSATLRENDPTPTERNTRVRPSLNTDARKCQDVITELGYPYEAIHVTTTDGYVLLLERIPRRDAHKAVYLQHGVLDSSMGWVSNGVVGSPAFAAYDQGYDVFLGNFRGLVSREHVNKNISSREYWQYSINEHGTEDIPAMIEKIHQVKTAELRLNKPDIEEESDGDQLYKLCAICHSMGGASMLMYVVMRRIEARPHRLSRLVLLSPAGFHHDSNLVFSVVEHVLFLLAPVLSCIFPAFYIPTRFFRMLVHKLARDLQNLPAVGGLVQTLVGYVVGGDSSNWVGVLGLPHYNINDMPGVSFGVALHLAQIKRARRFRMFDYGSAAANMEVYGSPEPLDLGEHYGLINIPVDLVAGQKDTVIRSSMVKRHYKLMKDAGVDVSYNEFEYAHLDFIFSHREELLSCVMSRLLLVEPNSKNQVNQRAVRSRKKGQVSVSG 701
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g3341 701 MobiDBLite consensus disorder prediction 107 121 - -
Ssu5g3341 701 PANTHER ALPHA/BETA HYDROLASE FAMILY PROTEIN 8 683 - -
Ssu5g3341 701 MobiDBLite consensus disorder prediction 264 287 - -
Ssu5g3341 701 MobiDBLite consensus disorder prediction 93 121 - -
Ssu5g3341 701 Gene3D alpha/beta hydrolase 284 673 IPR029058 -
Ssu5g3341 701 PANTHER LYSOSOMAL ACID LIPASE-RELATED 8 683 - -
Ssu5g3341 701 SUPERFAMILY alpha/beta-Hydrolases 293 669 IPR029058 -
Ssu5g3341 701 Pfam Partial alpha/beta-hydrolase lipase region 296 350 IPR006693 GO:0006629
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g3341 Ssu-Chr5 83079984 83084597 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu5g3341 1 685 Lipid Metabolism Gene Families AT1G18460 66.087 0.0 894
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g3341 - - gmx:100779931 1145.18
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu5g3341 5 83079984 83084597 Ssu5g3341 5 83079984 83084597 ECH
Ssu5g3341 5 83079984 83084597 Ssu5g3341 5 83079984 83084597 PCT