Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g3017 ATGACTTTCACCAAAGCATTGCTTCTTGCGATCGCTCTATGCTTCACCTCTGCATATGCAGCAACGTTTGACATCACAAACCGATGCTCCTACCCTGTGTGGGCCGCGGCTGTGCCCGTTGGCGGTGGCAGGAGGCTAAACTCGGGCCAGTCCTGGGCCTTGGACGTGCCTGCAGGAACCAAAGGAGCCCGCATCTGGGCCCGAACGGGATGCAGCTTCGATGGTTCGGGCCACGGTCATTGCCAGACCGGTGACTGCGGGGGCCTCCTCGAGTGCAAAGCATACGGTACACCTCCCAACACCCTAGCGGAATTCGCGCTGAACCAGTACAACAATTTGGACTTCGTCGACATCTCCCTCGTCGACGGTTTCAACGTTCCCATGGACTTTAGCCCAACGTCCAATGGCTGCACACGTGGCATAAAATGCACTGCTGACATTAATGGACAGTGTCCCAGTCAGCTCAAGACTCAAGGGGGTTGCAACAACCCATGTACAGTCTTCAAAACCAACGAGTATTGTTGCACTTCCGGTCCCTGTGGGCCTACTAATTACTCCAAATTCTTCAAGGATAGGTGCCCCGATGCTTACAGTTACCCCAAGGATGATGCAACAAGCACGTTTACATGCAAGGGTGGGACTAACTATAGGGTTGTCTTTTGCCCTTGA 669 0.5396 MTFTKALLLAIALCFTSAYAATFDITNRCSYPVWAAAVPVGGGRRLNSGQSWALDVPAGTKGARIWARTGCSFDGSGHGHCQTGDCGGLLECKAYGTPPNTLAEFALNQYNNLDFVDISLVDGFNVPMDFSPTSNGCTRGIKCTADINGQCPSQLKTQGGCNNPCTVFKTNEYCCTSGPCGPTNYSKFFKDRCPDAYSYPKDDATSTFTCKGGTNYRVVFCP 222
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g3017 222 Pfam Thaumatin family 27 222 IPR001938 -
Ssu5g3017 222 ProSiteProfiles Thaumatin family profile. 20 222 IPR001938 -
Ssu5g3017 222 SUPERFAMILY Osmotin, thaumatin-like protein 20 222 IPR037176 -
Ssu5g3017 222 SMART tha2 23 222 IPR001938 -
Ssu5g3017 222 CDD TLP-P 23 222 - -
Ssu5g3017 222 ProSitePatterns Thaumatin family signature. 77 92 IPR017949 -
Ssu5g3017 222 PIRSF PR5 1 222 IPR001938 -
Ssu5g3017 222 PANTHER OS03G0233200 PROTEIN 8 222 IPR001938 -
Ssu5g3017 222 Gene3D Thaumatin 21 222 IPR037176 -
Ssu5g3017 222 PANTHER THAUMATIN-RELATED 8 222 - -
Ssu5g3017 222 PRINTS Pathogenesis-related protein signature 64 75 IPR001938 -
Ssu5g3017 222 PRINTS Pathogenesis-related protein signature 42 51 IPR001938 -
Ssu5g3017 222 PRINTS Pathogenesis-related protein signature 22 34 IPR001938 -
Ssu5g3017 222 PRINTS Pathogenesis-related protein signature 212 221 IPR001938 -
Ssu5g3017 222 PRINTS Pathogenesis-related protein signature 77 106 IPR001938 -
Ssu5g3017 222 PRINTS Pathogenesis-related protein signature 114 130 IPR001938 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g3017 Ssu-Chr5 77466462 77467130 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu5g3017 7 222 Receptor kinase-like Gene Family AT5G38280 36.777 1.50e-43 153
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g3017 - - gmx:100301882 423.705
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu2g2838 2 89438553 89439290 Ssu5g3017 5 77466462 77467130 PCT