Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g3003 ATGCTCCGAGGGTTGGGCTGTTCACCCATTAAAGCGGACATAAATTTCAGGCGAGCGGTTTATGGAACTTTATATGCAATCCCACATCTCAAAATCAACAAAGGCAGGATCATAGTGATTGCTTCAGCGGTAATAAACTTCTTTGAGACTCTCAGAATGGAACTTGGTTGGGCTATTGGCATAACAATCGCCACGCCCGGTTGGATCAAGACGGACCTTACATTGAGGGCCATGGAGTATGAGGACATTAACTTCTGGGGTTCCGCGTATGGCACTTACTTTTCAATGCCCCACCTCAGAAAAAGCAAAGGCAAGATCGTAGCAGTAGCTTCCTGTACTGGATGGCTGCCTGTTCCAATGACGATCATCTACAGTGCGAGCAAAGCAGCAGTGATCAGCTTATATGAGAATCTGACAACAGAATTGGGAACAGACATAGGAATAACAATAGTCACTCCAGGGCTGATTGAGTCAGAAATATCGCAAgggaaggtcctatctaaggaAGGCCGGATGGTTGTTGATCAACAAATGAGAGATTTAGGCTAG 549 0.439 MLRGLGCSPIKADINFRRAVYGTLYAIPHLKINKGRIIVIASAVINFFETLRMELGWAIGITIATPGWIKTDLTLRAMEYEDINFWGSAYGTYFSMPHLRKSKGKIVAVASCTGWLPVPMTIIYSASKAAVISLYENLTTELGTDIGITIVTPGLIESEISQGKVLSKEGRMVVDQQMRDLG 182
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g3003 182 Gene3D - 12 80 - -
Ssu5g3003 182 PANTHER 11-BETA-HYDROXYSTEROID DEHYDROGENASE-LIKE 6 13 77 - -
Ssu5g3003 182 PANTHER 11-BETA-HYDROXYSTEROID DEHYDROGENASE-LIKE 6 79 178 - -
Ssu5g3003 182 PRINTS Glucose/ribitol dehydrogenase family signature 144 161 IPR002347 -
Ssu5g3003 182 PRINTS Glucose/ribitol dehydrogenase family signature 98 114 IPR002347 -
Ssu5g3003 182 PRINTS Glucose/ribitol dehydrogenase family signature 124 143 IPR002347 -
Ssu5g3003 182 Gene3D - 81 180 - -
Ssu5g3003 182 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 81 166 IPR036291 -
Ssu5g3003 182 PANTHER RETINOL DEHYDROGENASE-RELATED 79 178 - -
Ssu5g3003 182 PANTHER RETINOL DEHYDROGENASE-RELATED 13 77 - -
Ssu5g3003 182 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 13 78 IPR036291 -
Ssu5g3003 182 Pfam short chain dehydrogenase 82 163 IPR002347 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g3003 Ssu-Chr5 77163774 77167580 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g3003 K22418 - gmx:100787835 167.162
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu5g3003 5 77163774 77167580 Ssu5g3003 5 77163774 77167580 ECH