Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g3001 ATGAACTCCTGCGGCGGCGGAGTGCTCCCTCCCAACGTCGATTCCATGCACCTTCGCGTTCTCCCCGGTCCCTACGTATTGCAGGTTGATGAAATAATCAATATCACTTCTCCTCTGCGAGGCAGATATGAAAAGGCGCCTCCTGGAGTTAAAAGGTGCCTCAAGTTGTCAATGACTGATGGCGTTCAGAGAGTCTTTGGAATGGAGTATAGGCCAATCCAAGCTCTTGAAGTTTGTGCGTCTTCTGGTTTAAagGTTGCTATCTCTAATGTACATGTGCGCCGTGGACTTCTCATGCTGGTACCTGAAACCATTGAAATTTTGGGGGGATTAGTTGAGCAGCTGGATGCAGCTCGAAAACGTCTGGTTGATGAAATAAATAAGCCACCTAGGGGGAAAAGAACAAAAAATGGAGTGCTTCCTCCTTTAGCAACTAGAGCAACTCTTGCTGCATGGCCTTCAAGTGGAGTTGATGATCTTGCGTGCAGTGGCTCCACACTGCACAGTACTGATTCTGTCCCGGAAAACAACCAAGGTGCTGGCCTGAACATGTCTGGCAGTGGTAACAGTTTAACAACTGAAGATACTTTGCTCGTGGGTGCACAAAATGCTGCTTCTAATTCAATGCCCCACATAGCATCAAATGCTGAGGCTGTGAATATGGATATGCGTAGGGATACCAATACTGTTTCCTGTGCTAGTCCTATGGCTAACCAGCTCTCTTCTGTCATCTCAAGGGCTGAGGAGATGCACATAAATGCTGCTTGTAGTTCAATACCCCACATGGCAACAAATGCTGAGGCCATGGATATGGATATTCATAGGGATACCAATCCTGTTTCCCGTGCTAGTCCGATGGCTAACCAGCTCTCGTCTGTTATCTCAAGGGCTGAGGAGATGCACATAAATGCTGCTTCTAGTTCACCCCAGATGGCAACAAATTCTGAGGCCATGAATATGGATATGTGTAGGGATGCCATTCCTGTTTCCCTTGTTAGTCCTGTGGCTAACCATATCTCTTCTGTCATCTCAAGGGCTGAGGAGATGCACATAGATGCTGCTAATGTCACCAGGGAAAATTCTATTGACAATCAGCCTTCTCACATGGTTTCAAATGTTGCAGAGGCACATAATGATGCTGTGCATATAACAAGAGAAATTTCTGTGGCTACTGAGTGCTCTCCCGTTGTTGAAAATGTTGAGGCAGACAGGGATAGAACTCATGTTACCACAGCTAATGCTCATCTGAGAAGATCCTCTACTATTTTAAACACTAGTGATGTCCAGATGGTTGATGCCAGTGACCATCCACAAATACTGTCTGGAGACCAAGAGGTTCCTTTCACATACATAGCTAGTTTGTCAGCCAAGTGGGCTGCAATGAAGGAGAAAGCTCCTTTTGTTCGGGGTAAAATTAAGAGCTTTTTGACTGGTGTTAAAGGATTCCAGTATAAGAAAAGGACAACATATGAGCTTCAGGCATATGTAGACGATGGTAGCCTTATTTCTGAAATCCTCATTGATCATGATGTTGTACAGAAAGGAATTGGTTATTCTCCTGAGGAGGTAACTGCGGCTCTTTCTTCTCATGACATGAAAATTGTCCACCAAATGAAGGATACAATGCGTAAATTTCAAGCTTTTTTAGCTAACTTTGAGGGAATAATACTTGtggaattaaataaaaaatcttccCTTCCACTTGCCCTAGAGATGAGTCAAGGCTGTCCTCAATCTGATGCATGCTTACTTCTGAGAAGACTGAAGTCTCTTCACTCTCCAcaagttcaaaataattttccttCGGATCCAATTGAATTATCCCCGTAA 1830 0.4366 MNSCGGGVLPPNVDSMHLRVLPGPYVLQVDEIINITSPLRGRYEKAPPGVKRCLKLSMTDGVQRVFGMEYRPIQALEVCASSGLKVAISNVHVRRGLLMLVPETIEILGGLVEQLDAARKRLVDEINKPPRGKRTKNGVLPPLATRATLAAWPSSGVDDLACSGSTLHSTDSVPENNQGAGLNMSGSGNSLTTEDTLLVGAQNAASNSMPHIASNAEAVNMDMRRDTNTVSCASPMANQLSSVISRAEEMHINAACSSIPHMATNAEAMDMDIHRDTNPVSRASPMANQLSSVISRAEEMHINAASSSPQMATNSEAMNMDMCRDAIPVSLVSPVANHISSVISRAEEMHIDAANVTRENSIDNQPSHMVSNVAEAHNDAVHITREISVATECSPVVENVEADRDRTHVTTANAHLRRSSTILNTSDVQMVDASDHPQILSGDQEVPFTYIASLSAKWAAMKEKAPFVRGKIKSFLTGVKGFQYKKRTTYELQAYVDDGSLISEILIDHDVVQKGIGYSPEEVTAALSSHDMKIVHQMKDTMRKFQAFLANFEGIILVELNKKSSLPLALEMSQGCPQSDACLLLRRLKSLHSPQVQNNFPSDPIELSP 609
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g3001 609 Pfam Recq-mediated genome instability protein 1, C-terminal OB-fold 447 588 IPR032199 GO:0000166
Ssu5g3001 609 PANTHER RECQ-MEDIATED GENOME INSTABILITY PROTEIN 1 RMI1 1 594 - -
Ssu5g3001 609 Pfam RecQ mediated genome instability protein 7 121 IPR013894 -
Ssu5g3001 609 Gene3D - 1 126 IPR042470 -
Ssu5g3001 609 PANTHER RECQ-MEDIATED GENOME INSTABILITY PROTEIN 1 1 594 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g3001 K10990 - gmx:100803734 759.214
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu5g3001 5 77148111 77151489 Ssu5g3001 5 77148111 77151489 ECH