Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g2999 ATGTCTTCGGAAACCCTAGAAAACGAGAAGCCTCAAGGCGAAGAAGAGGCCCAAGCTGAAGACAACCACACCGAGCGAGAAGATAATTCGGAGAAGAAAGACGTCGACGAGAAAGGCGAAGAAGAAAGGGAtcaggaagaagaagagaagaatgaagaggaagaggacgacgacgacgacgacgacgaagaagaagagagagggaAGAACGTGGCAAACGGTTCCGCTACGCCAGCAAGTGAGAGGCCAACTAGGGAGAGGAAAACGGTGGAGAGGTACACCGTTTCTTCGCCCGACAAGTTTCCGAGATCTTCTTCTTTCAAAGCTTTGTCAATTGAAAAGGGCAACGGGACGCAGCTGAAGGACATTCCAAATGTGGCTTTCACGTTATCAAAGAGAAAACCTGATGACAACCTGCGTACGCTTCATAGTATATTGTTTGGGAAAAAAGCTAAGGCACACAATCTAAAGAGAAATATAGGACTGTTTTCTGGCTATGTGTGGGCTGAAAATGAGGAAAAACAGAGGGCGAAGATAAGGGAGAGAATTGACAAATGTGTGAAAGAAAAGTTGGTGGACTTTTGCAATGTGCTTAATATTCCGATAAATAAGACAAGTATGAAGAAGGAGGAACTGTCTGCAAAGTTGTTGGAATTTTTGGAGTCCCCACATGCCACAACTGATGTTCTGCTGGCTGATAaggaaaagAAAGGTAAAAAGCGAGCCAGAAAGGAAACCCCACTCAAATCTTCTGGGGAAGGATCAGAAACACCTGCCAAGAAGCAAAAGCAAACTTCACGAGTTGggaaaaagcaaaagaagtcTTCTTACATTGAGGATGATGAGGATACAGCTGAACCTTCAGATGCAGAAGTTGATTCTCAGGAAGATGATGTTTCAGTGCCAAAAAGTGAAAGTGATCATGAGGAAAGCAAATCAGAGGACGAGGAAGATAAACAAAAGGCTCACAAGCGTACTTCAAAAAAGACTCTGAAGGAGGATCAAACCACACCTGTAAAGAAGATCACTGCTGTAAAGACTGCCAAGAGCAATgaaaaaactcctaaaaaatCTACTTCAAGAAAGGCTGTTATTGACAATAAGTCCAAGCAATCAGCTTCCAAGAAACAGAAAACTGCAAGGGAAAACCAGAACCCTAAAGGGAAGGTTGCAAACAAAAAACGAACTGACAAGTCTTCAAAGGCTTTAGTTAAGGATCAAGGCAAAGGTAAAAGTAGTGAGAAGGCCAAAGCAGAACCAAGTAAGAAGGAGATGCATCGAGTGGTTGTTGATATTTTGAAGGAAGTAGATTTCAATAAGGCAACTTTATCTGATATCCTCAGGCAACTTGGTACCCACTTTGACTTGGATTTAATGCATAGAAAAGCAGAGGTGAAGGATATAATTACAGATGTAATTAATAACATGTCTGATGATGATGGAGAGGAAGCGGAAAATGATGCGGATGATGATGCAGAAGATGATGCGTGA 1491 0.391 MSSETLENEKPQGEEEAQAEDNHTEREDNSEKKDVDEKGEEERDQEEEEKNEEEEDDDDDDDEEEERGKNVANGSATPASERPTRERKTVERYTVSSPDKFPRSSSFKALSIEKGNGTQLKDIPNVAFTLSKRKPDDNLRTLHSILFGKKAKAHNLKRNIGLFSGYVWAENEEKQRAKIRERIDKCVKEKLVDFCNVLNIPINKTSMKKEELSAKLLEFLESPHATTDVLLADKEKKGKKRARKETPLKSSGEGSETPAKKQKQTSRVGKKQKKSSYIEDDEDTAEPSDAEVDSQEDDVSVPKSESDHEESKSEDEEDKQKAHKRTSKKTLKEDQTTPVKKITAVKTAKSNEKTPKKSTSRKAVIDNKSKQSASKKQKTARENQNPKGKVANKKRTDKSSKALVKDQGKGKSSEKAKAEPSKKEMHRVVVDILKEVDFNKATLSDILRQLGTHFDLDLMHRKAEVKDIITDVINNMSDDDGEEAENDADDDAEDDA 496
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g2999 496 MobiDBLite consensus disorder prediction 8 39 - -
Ssu5g2999 496 MobiDBLite consensus disorder prediction 40 66 - -
Ssu5g2999 496 PANTHER OS01G0924900 PROTEIN 1 494 - -
Ssu5g2999 496 MobiDBLite consensus disorder prediction 1 106 - -
Ssu5g2999 496 MobiDBLite consensus disorder prediction 296 336 - -
Ssu5g2999 496 MobiDBLite consensus disorder prediction 476 496 - -
Ssu5g2999 496 MobiDBLite consensus disorder prediction 474 496 - -
Ssu5g2999 496 MobiDBLite consensus disorder prediction 230 250 - -
Ssu5g2999 496 MobiDBLite consensus disorder prediction 230 425 - -
Ssu5g2999 496 Gene3D - 412 475 - -
Ssu5g2999 496 PANTHER DEK PROTEIN 1 494 IPR044198 GO:0003677|GO:0006325
Ssu5g2999 496 Coils Coil 32 63 - -
Ssu5g2999 496 Pfam DEK C terminal domain 420 472 IPR014876 -
Ssu5g2999 496 Coils Coil 169 189 - -
Ssu5g2999 496 SUPERFAMILY DEK C-terminal domain 414 474 - -
Ssu5g2999 496 MobiDBLite consensus disorder prediction 346 425 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g2999 Ssu-Chr5 77133791 77138642 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g2999 K17046 - gmx:100785644 660.218
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu5g2999 5 77133791 77138642 Ssu5g2999 5 77133791 77138642 ECH