Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g2992 ATGGACGCTTGTGTAAAACAGGAAGTGTTGGAGACTCCGATTGTGACCGAGAGGAAGCCGCGAAACGGCGCCGTTTCGGTGCCCCCTCCCGGGTCGGTCATTGAGctcagcagcagcagcagcgaTTCCGATTCCGACGCCGACGACGTCGATTTGGACGGTGTAGTCACCAGCGCGGTGCAGAACGTTGGTTCGGGAGAGAGTCCGTGGAAGAAGCGAAGGATGAGCGACGTTGGAGTGGTTTTGCCGGTTGGATTCCTCAGCCCTCTCCCTCCGGCGCCGCCGCCAGAGGCGGTGCTGTCGTTGCCGGCGCCGGAATGGGCTTCTAATTCGCTATCGCGTCCCAACGCGAATATGAATTTGAGTGTGAATAGCTGCAAGCAGTTCTGGAAGGCCGGGGATTACGATGGTGCTCCTCGCGGTGGCTCTGGATCTTCAACAGTTGGTATGGATCATGTCAGAGTTCACCCCAAGTTTTTACACTCTAATGCCACAAGTCATAAGTGGGCTCTTGGAGCTTTTGCTGAGCTTTTGGACAATTCATTGGATGAGGTTTGTAATGGGGCCACATATGTTAATGTAGATatgcttaaaaataagaaagatggCACCAGGATGTTGCTGATTGAAGATAATGGTGGTGGGATGGATCCTGATAAAATGCGTCAATGCATGTCGCTGGGGTATTCTGTGAAAAGCAAAATGGCAAATACAATTGGACAATATGGAAATGGCTTCAAAACAAGTACCATGAGGCTTGGGGCTGATGTAATTGTATTCTCCCGTTACCCTGGGAAAGATGGGAAAAGCTCTACACAAAGCATAGGGTTGCTGTCTTACACATTTTTGAGGAGTACTGGAAAGGAAGACATTGTAGTACCCAtgCTGGACTATGAAAGAAGAGGGCACGAATGGAATAATATAATACGAACTTCTCTGGATGATtggaataaaaatgttgaaacaatAGTACAATGGTCACCATTTTCCAGTGAGGCTGATCTTCTTCGTCAGttCAACTTGGTGAAAGATCATGGTACACGAGtaattatatacaatctttGGGAGGATGACCAAGGTCAGCTGGAACTTGATTTCGATGCAGACCCACATGATATCCAAATAAGAGGCGTAAATCGAGATGAGAAAAACATACAGATGGCTAGAGAGTTTCCTAATTCTAGACACTTCTTGACCTATCGACATTCACTAAGGAGTTATGCCTCGATTTTATATCTGAGACTTCCTCCTGGCTTCCGAATTATTCTTCGTGGGGTTGATATTTTGCATCACAACATAGTGAATGATATGATGATGTCTCAGGAGGTGACATATAGGCCTCAATCTGGAGTTGATGGGCTTCCAAAGGATTCAAATATGGTTGCTGTTGTTACTATTGGATTTGTCAAGGATGCAGTTCACCATGTTGATGTTTCAGGTTTTAATGTTTATCATAAGAATCGACTCATTAAGCCATTCTGGAGGATCTGGAATCCAGCTGGAAGTGGAGGGCGTGGGGTCATAGGTGTGTTGGAAGCTAATTTTGTTGAACCTGCTCATGATAAGCAAGGCTTTGAGCGTACATTAGTTTTATCAAGACTGGAGTCTAAATTGATACAAATGCAGAAAAAATACTGGGGCGATAACTGCCATAAAATTGGTTATGCTTCCAATCGAAGTAAAATACAAATCAGAAATTCTGCTGATAAAGAGACATCTCCCGATAATGTTCCAGAATCATCACAATCAAAAAGGAACTATTCTACAATGGAAGGCAAGGCGACACCATTGACATCAGACAAATTGCATTCACAGTCGAATCAGAAACGGATACGAAAACAAACAGAAAAATATAGTGCATTTACAAATGGTCATCTGTCAGTCTCTCCTAAACGTAGAGTACAAAGTTCTTCTGAACAATCATCATCTGATGATGATGTCAgtgatcaaattaataatgtattgcCTAAGAAAAAAGCTCAAAAGATATCTGGTGCtgaaaaatcatttgaaaatgAGAATGGATGTTTTCAAGATACCACATGGGGATCGAAGCTAAAGGGAAAAGATGTAAATGATGGTGAGCAACCACTATCTGACAATGATTTACTGACTCTAGAGCAATTGAAAAAAGAGAATCGTGAGTTGAAGGAAAGATTACAGAGGAAGGAGGAGGAAAGTTTAGGGGAAGTTTTGCAGGCTCTGCAGTATGAGAAAGACAGGTGTAAATCTCTTGAAACTCAGCTCCATGATGCAGAAAAAAAGATTGAAGAATTAAACAAAGATCAGGAAACTCTAATTGATGTATTCTCTGAAGAGAGGGATCGACGTGATGCTGAagagaaaaatttgagaaagaagCTCCAGGAGGCATCAACTACCATCCAAGAGCTGCTTGACAAGATACGGATGCTTGAAAGAAAGTCTTCAAGCGGCAAATTAGAACGATGA 2451 0.4117 MDACVKQEVLETPIVTERKPRNGAVSVPPPGSVIELSSSSSDSDSDADDVDLDGVVTSAVQNVGSGESPWKKRRMSDVGVVLPVGFLSPLPPAPPPEAVLSLPAPEWASNSLSRPNANMNLSVNSCKQFWKAGDYDGAPRGGSGSSTVGMDHVRVHPKFLHSNATSHKWALGAFAELLDNSLDEVCNGATYVNVDMLKNKKDGTRMLLIEDNGGGMDPDKMRQCMSLGYSVKSKMANTIGQYGNGFKTSTMRLGADVIVFSRYPGKDGKSSTQSIGLLSYTFLRSTGKEDIVVPMLDYERRGHEWNNIIRTSLDDWNKNVETIVQWSPFSSEADLLRQFNLVKDHGTRVIIYNLWEDDQGQLELDFDADPHDIQIRGVNRDEKNIQMAREFPNSRHFLTYRHSLRSYASILYLRLPPGFRIILRGVDILHHNIVNDMMMSQEVTYRPQSGVDGLPKDSNMVAVVTIGFVKDAVHHVDVSGFNVYHKNRLIKPFWRIWNPAGSGGRGVIGVLEANFVEPAHDKQGFERTLVLSRLESKLIQMQKKYWGDNCHKIGYASNRSKIQIRNSADKETSPDNVPESSQSKRNYSTMEGKATPLTSDKLHSQSNQKRIRKQTEKYSAFTNGHLSVSPKRRVQSSSEQSSSDDDVSDQINNVLPKKKAQKISGAEKSFENENGCFQDTTWGSKLKGKDVNDGEQPLSDNDLLTLEQLKKENRELKERLQRKEEESLGEVLQALQYEKDRCKSLETQLHDAEKKIEELNKDQETLIDVFSEERDRRDAEEKNLRKKLQEASTTIQELLDKIRMLERKSSSGKLER 816
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g2992 816 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 172 363 IPR036890 -
Ssu5g2992 816 Pfam Morc6 ribosomal protein S5 domain 2-like 402 546 IPR041006 -
Ssu5g2992 816 Coils Coil 735 769 - -
Ssu5g2992 816 MobiDBLite consensus disorder prediction 564 701 - -
Ssu5g2992 816 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 172 274 - -
Ssu5g2992 816 Coils Coil 699 726 - -
Ssu5g2992 816 MobiDBLite consensus disorder prediction 16 50 - -
Ssu5g2992 816 Gene3D - 157 360 IPR036890 -
Ssu5g2992 816 MobiDBLite consensus disorder prediction 564 604 - -
Ssu5g2992 816 PANTHER PROTEIN MICRORCHIDIA 7 1 801 - -
Ssu5g2992 816 MobiDBLite consensus disorder prediction 667 681 - -
Ssu5g2992 816 MobiDBLite consensus disorder prediction 617 657 - -
Ssu5g2992 816 Coils Coil 781 808 - -
Ssu5g2992 816 PANTHER ZINC FINGER CW-TYPE COILED-COIL DOMAIN PROTEIN 3. 1 801 IPR045261 GO:0016887
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g2992 Ssu-Chr5 76972043 76994764 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g2992 - - gmx:100786679 1312.75
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu5g2992 5 76972043 76994764 Ssu5g2992 5 76972043 76994764 ECH