Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g2989 ATGCCGGAAGAGGATTTGGTGGACATCAAGTTTAGGTTGTACGATGGCTCCGATATTGGACCCTTCAGGTACTCCTCCACTGCCACCATCGATATGCTCAAGCAAAGGATTGTCTCCGATTGGCCCAAagGTAAAACAGTCGTGCCAAAGTCAGCAAATGAAGTGAAATTGATTAGTTCTGGTAAAATCTTGGAAAACAACAAGACTGTTGGTCAATGTAAAGTACCATTTGGTGAGATTGCAGGGGGTGTTATAATAATGCATGTTGTTGTACAGCCATCTCTGGCAAAAACTAAAGCTGAAAAGAAGATTGATGATTCGCCCAAGAAGGTTGTCTGTTCTTGTTCCATATTGTGA 357 0.4202 MPEEDLVDIKFRLYDGSDIGPFRYSSTATIDMLKQRIVSDWPKGKTVVPKSANEVKLISSGKILENNKTVGQCKVPFGEIAGGVIIMHVVVQPSLAKTKAEKKIDDSPKKVVCSCSIL 118
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g2989 118 SUPERFAMILY Ubiquitin-like 2 97 IPR029071 -
Ssu5g2989 118 CDD Ubl_MUBs_plant 6 93 - -
Ssu5g2989 118 Gene3D - 1 100 - -
Ssu5g2989 118 PANTHER UBIQUITIN-LIKE PROTEIN 3 HCG-1 PROTEIN 1 118 IPR040015 -
Ssu5g2989 118 PIRSF MUB 1 118 IPR017000 -
Ssu5g2989 118 Pfam Ubiquitin-2 like Rad60 SUMO-like 6 116 IPR039540 -
Ssu5g2989 118 ProSiteProfiles Ubiquitin domain profile. 7 75 IPR000626 GO:0005515
Ssu5g2989 118 PANTHER MEMBRANE-ANCHORED UBIQUITIN-FOLD PROTEIN 3 1 118 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g2989 Ssu-Chr5 76936290 76941617 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g2989 - - gmx:100810070 230.335
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu5g2989 5 76936290 76941617 Ssu5g2989 5 76936290 76941617 ECH