Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g2969 ATGGCTAGGGTTTTGGCTCAGTCTATTAGTTTGCCTGGAGTACTGGCTGGGCAAAGGCATGGTCAGCACAAGGGGTCAGCAAAATTAAGAAGATCTGTCAAAATGATGAATACTTTACGAATGCCTGCATTAAGAATGTCAACTTTTTCTGGACTACGTACTGTTAATCCTTTGGATACTGTGTTGAGACCTCGACAAGATTTTCATTCTAAGATGTTGAGTACAACTTCTTCTAGCCGTGAAAGGGCTAAAAGATGTGTACCTAAAGCGATGTTTGAGCGTTTCACAGAAAAAGCAATCAAGGTAATTATGCTAGCTCAGGAGGAAGCAAGACGGCTGGGGCACAACTTTGTTGGAACGGAACAGATTCTATTGGGTCTTATTGGTGAAGGCACTGGTATTGCTGCTAAGGTTCTGAAGTCTATGGGAATTAACCTTAAGGATGCTCGTGTGGAAGTGGAAAAGATAATTGGAAGGGGTAGTGGATTTGTTGCAGTTGAGATTCCATTTACTCCTCGTGCAAAGCGTGTTTTGGAACTCTCACTGGAGGAAGCTCGTCAACTTGGTCACAATTATATTGGATCTGAGCACTTGCTTCTTGGTCTCCTTCGAGAGGGTGAGGGTGTAGCAGCACGTGTTCTTGAAAATTTGGGTGCTGATCCAAATAATATTCGCGCTCAGGTTATCCGCATGGTTGGTGAGGGTGCTGACAGTGTTGGTGCTACTGTTGGCCCTGGAAGTAGTAATAACAATAAGATGCCAACTTTGGAGGAGTATGGCACCAATTTGACCAAGCTAGCGGAAGAGGGAAAATTGGATCCTGTTGTGGGTAGGCAACAACAAATTGAACGTGTCACTCAAATTTTGGGCCGTCGTACCAAAAATAACCCTTGTCTTATTGGAGAACCTGGCGTTGGCAAGACAGCTATTGCTGAAGGTCTTGCCCAAAGGATTGCAAATGGTGATGTTCCTGAAACCATAGAGGGAAAAAAGGTTATAACTCTTGATATGGGGCTACTGGTAGCTGGAACTAAATATCGTGGAGAATTTGAGGAGAGATTGAAGAAACTGATGGAGGAAATCAAACAAAGTGACgagataatactttttattgatGAAGTGCATACTCTAATTGGTGCTGGAGCAGCTGAGGGGGCAATTGATGCTGCAAACATATTAAAACCAGCTCTTGCCAGAGGTGAACTACAGTGCATAGGAGCCACAACACTGGATGAATATAGGAAGCACATTGAAAAGGATCCAGCTCTGGAGAGGCGATTCCAGCCAGTTAAAGTGCCAGAGCCAACTGTGGATGAAACCATACAAATACTGAAAGGACTTAGAGAACGCTATGAGATTCACCACAAGCTCCGTTATACAGATGATGCTCTTGTAGCTGCTGCACAGCTGTCACACCAATATATTAgTGATCGATTTTTGCCCGACAAAGCCATAGATTTGATTGATGAAGCTGGTTCCCGAGTTCGGCTTCAACATGCACAGTTACCTGAAGAAGCAAGAGAGCTTGACAAGGAGGTCAGGCAGATTgtgaaggagaaagaagaagcTGTTCGCAATCAAGACTTTGAAAAGGCTGGAGAGCTACGAGATAGAGAAATGGATCTTAAGGCACAGATATCTGCACTTATAGAAAAAGGCAAGGAGATGAGCAAGGCAGAGAGTGAGGCAGGAGATGTAGGTCCCATGGTGACTGAAGTTGACATACAACATATTGTCTCATCCTGGACTGGTATTCCTGTGGAGAAAGTCTCAACCGATGAATCTGATCGCCTCCTCAAGATGGAAGAGACTTTACACAAGCGAGTCATAGGGCAGGATGAAGCAGTAAAAGCCATTAGCCGGGCCATCCGTCGAGCCAGGGTTGGACTGAAGAACCCTAATCGTCCAATTGCCAGCTTCATCTTTTCTGGACCAACTGGTGTGGGGAAGTCTGAGTTGGCCAAAGCATTGGCTGCATACTACTTTGGTTCTGAAGAAGCCATGATTCGGCTTGACATGAGTGAATTTATGGAAAGGCACACTGTCTCCAAACTCATTGGTTCACCTCCTGGATATGTTGGTTACACCGAGGGTGGTCAACTGACTGAGGCAGTTCGGCGTCGTCCCTATACTGTTGTACTCTTTGATGAGATTGAGAAAGCCCATCCTGATGTATTCAACATGATGCTTCAGATCCTGGAAGATGGAAGACTAACAGACAGCAAGGGAAGAACTGTGGACTTCAAGAACACTCTTCTTATAATGACATCAAATGTTGGAAGCAGTGTGATTGAGAAAGGAGGCCGTAAAATAGGATTTGACCTTGATTATGATGAGAAGGATAGCAGTTACAATCGAATCAAGAGCTTGGTGACTGAGGAGCTGAAGCAATACTTCAGGCCGGAGTTTTTGAATAGGTTGGATGAAATGATTGTTTTCAGGCAACTCACAAAGCTGGAGGTAAAGGATATAGCTGACATAATGCTGAAGGAGGTGTTTGAGAGACTTAAAGCCAAAGAGATTGATCTGTCAGTGACAGAAAGATTTAGGGAGAGGGTGGTTGAGGAAGGATATAATCCTAGTTATGGGGCTAGGCCTCTAAGAAGAGCCATAATGCGACTTTTGGAGGACAGCATGGCTGAGAAGTTGCTTGCTAGAGAGATTAAAGAGGGTGACTCGGTTATAGTTGATGCTGATTCTGATGGTAATGTGATTGTGCTCAACGGTAGTAGTGGTGCCCCAGAGTCTCTAGCAGAAGCTCTTCCTGTGTAA 2772 0.4401 MARVLAQSISLPGVLAGQRHGQHKGSAKLRRSVKMMNTLRMPALRMSTFSGLRTVNPLDTVLRPRQDFHSKMLSTTSSSRERAKRCVPKAMFERFTEKAIKVIMLAQEEARRLGHNFVGTEQILLGLIGEGTGIAAKVLKSMGINLKDARVEVEKIIGRGSGFVAVEIPFTPRAKRVLELSLEEARQLGHNYIGSEHLLLGLLREGEGVAARVLENLGADPNNIRAQVIRMVGEGADSVGATVGPGSSNNNKMPTLEEYGTNLTKLAEEGKLDPVVGRQQQIERVTQILGRRTKNNPCLIGEPGVGKTAIAEGLAQRIANGDVPETIEGKKVITLDMGLLVAGTKYRGEFEERLKKLMEEIKQSDEIILFIDEVHTLIGAGAAEGAIDAANILKPALARGELQCIGATTLDEYRKHIEKDPALERRFQPVKVPEPTVDETIQILKGLRERYEIHHKLRYTDDALVAAAQLSHQYISDRFLPDKAIDLIDEAGSRVRLQHAQLPEEARELDKEVRQIVKEKEEAVRNQDFEKAGELRDREMDLKAQISALIEKGKEMSKAESEAGDVGPMVTEVDIQHIVSSWTGIPVEKVSTDESDRLLKMEETLHKRVIGQDEAVKAISRAIRRARVGLKNPNRPIASFIFSGPTGVGKSELAKALAAYYFGSEEAMIRLDMSEFMERHTVSKLIGSPPGYVGYTEGGQLTEAVRRRPYTVVLFDEIEKAHPDVFNMMLQILEDGRLTDSKGRTVDFKNTLLIMTSNVGSSVIEKGGRKIGFDLDYDEKDSSYNRIKSLVTEELKQYFRPEFLNRLDEMIVFRQLTKLEVKDIADIMLKEVFERLKAKEIDLSVTERFRERVVEEGYNPSYGARPLRRAIMRLLEDSMAEKLLAREIKEGDSVIVDADSDGNVIVLNGSSGAPESLAEALPV 923
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g2969 923 Pfam Clp amino terminal domain, pathogenicity island component 182 233 IPR004176 -
Ssu5g2969 923 Pfam Clp amino terminal domain, pathogenicity island component 106 158 IPR004176 -
Ssu5g2969 923 ProSitePatterns Chaperonins clpA/B signature 1. 388 400 IPR018368 GO:0005524
Ssu5g2969 923 Gene3D - 91 238 IPR036628 -
Ssu5g2969 923 Gene3D - 816 913 - -
Ssu5g2969 923 Pfam C-terminal, D2-small domain, of ClpB protein 816 896 IPR019489 -
Ssu5g2969 923 Coils Coil 923 923 - -
Ssu5g2969 923 Pfam AAA lid domain 436 537 IPR041546 -
Ssu5g2969 923 Coils Coil 506 526 - -
Ssu5g2969 923 PANTHER ATP-DEPENDENT CLP PROTEASE 75 918 - -
Ssu5g2969 923 ProSitePatterns Chaperonins clpA/B signature 2. 670 688 IPR028299 -
Ssu5g2969 923 Pfam ATPase family associated with various cellular activities (AAA) 298 414 IPR003959 GO:0005524|GO:0016887
Ssu5g2969 923 PRINTS ATP-dependent Clp protease ATP-binding subunit signature 714 732 IPR001270 GO:0005524
Ssu5g2969 923 PRINTS ATP-dependent Clp protease ATP-binding subunit signature 640 658 IPR001270 GO:0005524
Ssu5g2969 923 PRINTS ATP-dependent Clp protease ATP-binding subunit signature 747 761 IPR001270 GO:0005524
Ssu5g2969 923 PRINTS ATP-dependent Clp protease ATP-binding subunit signature 685 703 IPR001270 GO:0005524
Ssu5g2969 923 Coils Coil 347 367 - -
Ssu5g2969 923 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 585 902 IPR027417 -
Ssu5g2969 923 SMART AAA_5 636 817 IPR003593 -
Ssu5g2969 923 SMART AAA_5 293 433 IPR003593 -
Ssu5g2969 923 Pfam AAA domain (Cdc48 subfamily) 635 809 IPR003959 GO:0005524|GO:0016887
Ssu5g2969 923 ProSiteProfiles Clp repeat (R) domain profile. 92 234 IPR004176 -
Ssu5g2969 923 SMART ClpB_D2_small_2 816 906 IPR019489 -
Ssu5g2969 923 Gene3D UVR domain 502 560 - -
Ssu5g2969 923 PANTHER ATP-DEPENDENT CLP PROTEASE ATP-BINDING SUBUNIT CLPA HOMOLOG CD4B, CHLOROPLASTIC 75 918 - -
Ssu5g2969 923 CDD AAA 610 758 - -
Ssu5g2969 923 Gene3D - 246 436 IPR027417 -
Ssu5g2969 923 Gene3D - 588 814 IPR027417 -
Ssu5g2969 923 Gene3D - 438 582 - -
Ssu5g2969 923 ProSiteProfiles UVR domain profile. 510 545 IPR001943 GO:0005515
Ssu5g2969 923 SUPERFAMILY Double Clp-N motif 93 233 IPR036628 -
Ssu5g2969 923 CDD AAA 276 428 - -
Ssu5g2969 923 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 253 535 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g2969 Ssu-Chr5 76622133 76627193 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g2969 K03696 - gmx:100814891 1687.93
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu1g2431 1 67742874 67748695 Ssu5g2969 5 76622133 76627193 ECH
Ssu5g2969 5 76622133 76627193 Ssu5g2969 5 76622133 76627193 ECH
Ssu5g2969 5 76622133 76627193 Ssu1g2431 1 67742874 67748695 PCT