Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g2964 ATGGAAATCGACGCTCCGAAATCGACAAATTCTGATCAGATCGTTCCCAAATTCTCCATAAACGTGCTGCAGCTCTTGAAATCCGCGCAAATGCAGCATGGCTTGCGCCATGGGGATTACACTCGCTATAGGAGGTATTGCACAGCTCGATTGAGGAGGTTGTATAAATCGTTGAAGTTTACCCATGGTCGTGGCAAATATGCAAAAAGAGCCATAACTGAGTCTACTGTCATTGAAGTAAGGTTTCTCCATCTAATTCTCTATTCAGCAGagagagcttggagtcatgccATGGAGAAAAGGCAGCTTCCAAATGGCCCAAATGCACGTCAACGTATATATTTGATTGGTAGATTACGGAAAGCAGTAAAATGGGCTACTTTGTTTTCACAATTGTGTGCGGTCAAGGCAGATTCTAGAACATCTTTGGAAGCTGAGGCTTATGAATCCTATATGAAAGGGAGTTTGTTGTTTGAGCAAGATCAGAATTGGGATGTGGCTTTAAAGAACTTCAAAAGTGCTAGGGCTGTATATGAGGAATTAGGGAAATATGGAGATCTGGATAACCAAGTTTTGTGTCGTGAGCGAGTTGAGGAACTAGAACCTAGTATCCGATACTGCCTTCACAAAATTGGCCAGTCAAATCTACAGGCCTCTGAACTTTTACAAATCGGTGATGTGGAAGGTCCTGCATTAGACCTTTTTAAAGCTAAATTAGAGGCCGTCATGGCTGAGGCAAGATCTCAGCAAGCTGCTTCCATGACAGAATTCCTTTGGCTTGGCCACAGATTTCCAATATCAAATGCCAAAACAAGGGTTGCCATCCTGAAAGCTCAGGAGCTGGAGAAAGATATACATGGTCCCTTGGCAGACTCAATTCCAGCTGACAAAAGACttgttatttttgacaaaatctttTCTGCATACCATGAAGCCAGAGGCTATATTCGGGCTGATTTGGCCACTACAGGAAGTACAGAAAGTGTGAAAGATGATTTGAATGGTCTTGATAAGGCTGTCAGTGCTGTCCTAGGAGAAAGAACCATTGAGCGCAACCTCTTGTTGGTTAAGGTTGCAAAAAGCAAACTTGCAAAGCGTCatgatgataaaaatgaaaaagtcaCCAAACCTGAAGAGCTTGTTCGCTTATATGATCTCTTGCTACAGAATACAGCTGATCTATCTGATTTAGTCAGTTCTGGAAGGGATAAAAAGCCAGAAGAAGTTAGCTTTGCTGAAGTGTGTTCATGCAAAAGTTTGGCTTTTCGAGCTCAAAGGTGCTTTTATGTTGCAAAGTCATATGGTGTGGCTGGAAAGAGGGCTGAAGCATATGCGTTGTACTGTCGTGCTCGCAATTTGGCAGATGATGCCTTGAGAAAGTTTCAAATGTTAGATGGTGATAATAAgACTATGATGAAAGAGTTAGAGGACTTGTACAATGAGTGCCGATCTAACAGTTGTATAGAGCATGCATTGGGGATCATGGAGGAGAAGAGGACTCAAGAGAATATATCTGAAAGGGTCTCCAATATATCATTGACCGGAACTGAGCGGTTGGAGAAGTTCCTTCATGAGAAACTTGATGTTTATGAGTCTGCTGTGGGTGATTCAAATGTGAAGTGTACACCACGCATTGCAGGCTTCCCCCAGCTTTCCAGGCAATATCCCGTAATCCTATTGTGCTGGATCTGGCTTATAACATGA 1704 0.4137 MEIDAPKSTNSDQIVPKFSINVLQLLKSAQMQHGLRHGDYTRYRRYCTARLRRLYKSLKFTHGRGKYAKRAITESTVIEVRFLHLILYSAERAWSHAMEKRQLPNGPNARQRIYLIGRLRKAVKWATLFSQLCAVKADSRTSLEAEAYESYMKGSLLFEQDQNWDVALKNFKSARAVYEELGKYGDLDNQVLCRERVEELEPSIRYCLHKIGQSNLQASELLQIGDVEGPALDLFKAKLEAVMAEARSQQAASMTEFLWLGHRFPISNAKTRVAILKAQELEKDIHGPLADSIPADKRLVIFDKIFSAYHEARGYIRADLATTGSTESVKDDLNGLDKAVSAVLGERTIERNLLLVKVAKSKLAKRHDDKNEKVTKPEELVRLYDLLLQNTADLSDLVSSGRDKKPEEVSFAEVCSCKSLAFRAQRCFYVAKSYGVAGKRAEAYALYCRARNLADDALRKFQMLDGDNKTMMKELEDLYNECRSNSCIEHALGIMEEKRTQENISERVSNISLTGTERLEKFLHEKLDVYESAVGDSNVKCTPRIAGFPQLSRQYPVILLCWIWLIT 567
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g2964 567 Gene3D - 17 213 IPR038253 GO:0003723
Ssu5g2964 567 PANTHER SIGNAL RECOGNITION PARTICLE 68 KDA PROTEIN 7 551 IPR026258 GO:0005047|GO:0005786|GO:0006614|GO:0008312|GO:0030942
Ssu5g2964 567 CDD SRP68-RBD 21 209 IPR034652 GO:0003723
Ssu5g2964 567 PIRSF SRP68 18 550 IPR026258 GO:0005047|GO:0005786|GO:0006614|GO:0008312|GO:0030942
Ssu5g2964 567 Pfam RNA-binding signal recognition particle 68 35 541 IPR026258 GO:0005047|GO:0005786|GO:0006614|GO:0008312|GO:0030942
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g2964 Ssu-Chr5 76490238 76501856 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g2964 K03107 - gmx:100816486 1029.62
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu5g2964 5 76490238 76501856 Ssu5g2964 5 76490238 76501856 ECH